BRAF
| Name | Synonyms | Full Name | RefSeq ID | Description (.pdf) | IGV-img (humangenome) | Sashimi-img (humangenome) | UCSC-img (humangenome) | IGV-img (batgenome) |
|---|---|---|---|---|---|---|---|---|
| BRAF | BRAF1 | B-Raf proto-oncogene, serine/threonine kinase | NM_004333 | NONE | ![]() |
Download all snapshots for IGV, UCSC and Sashimi (zip archive)
Description
This gene encodes a protein belonging to the raf/mil family of serine/threonine protein kinases. This protein plays a role in regulating the MAP kinase/ERKs signaling pathway, which affects cell division, differentiation, and secretion. Mutations in this gene are associated with cardiofaciocutaneous syndrome, a disease characterized by heart defects, mental retardation and a distinctive facial appearance. Mutations in this gene have also been associated with various cancers, including non-Hodgkin lymphoma, colorectal cancer, malignant melanoma, thyroid carcinoma, non-small cell lung carcinoma, and adenocarcinoma of lung. A pseudogene, which is located on chromosome X, has been identified for this gene.
This gene shows an increase in expression over the time points in the human cells Ebola data. Especially at 23 h the expression is strong (twice as high as in the 7 h time point).
Maximum read counts and DESeq normalized read counts for human and bat cell lines
| Source | Species | Mapping on | Mock3h | Mock7h | Mock23h | EBOV3h | EBOV7h | EBOV23h | MARV3h | MARV7h | MARV23h | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Read_Max | H. sapiens | Genome | 131 | 121 | 135 | 119 | 187 | 517 | 126 | 169 | 86 | |
Read_Max | R. aegyptiacus | Transcriptome | 117 | 106 | 65 | 95 | 76 | 124 | 66 | 98 | 76 | |
Read_Max | R. aegyptiacus | Genome | 143 | 104 | 65 | 108 | 69 | 71 | 58 | 115 | 88 | |
DESeq | H. sapiens | Genome | 1734.26 | 1432.9 | 1353.23 | 1581.99 | 1513.9 | 4456.71 | 1444.0 | 1275.16 | 1063.34 | |
DESeq | R. aegyptiacus | Transcriptome | 1141.91 | 973.14 | 843.86 | 897.44 | 896.78 | 1332.94 | 880.91 | 862.74 | 731.38 | |
DESeq | R. aegyptiacus | Genome | 2462.15 | 2129.29 | 1843.26 | 2112.23 | 1999.0 | 3062.49 | 2136.61 | 1933.2 | 1739.78 |
