ITGA9
| Name | Synonyms | Full Name | RefSeq ID | Description (.pdf) | IGV-img (humangenome) | Sashimi-img (humangenome) | UCSC-img (humangenome) | IGV-img (batgenome) |
|---|---|---|---|---|---|---|---|---|
| ITGA9 | ALPHA-RLC, ITGA4L, RLC,RLC, ALPHA-RLC | integrin, alpha 9 | NM_002207 |  |
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Download all snapshots for IGV, UCSC and Sashimi (zip archive)
Description
The integrin, alpha 9 is involved in the PI3K-Akt signaling pathway, Focal adhesion, ECM-receptor interaction, Cell adhesion molecules (CAMs), Regulation of actin cytoskeleton, Hypertrophic cardiomyopathy (HCM), Arrhythmogenic right ventricular cardiomyopathy (ARVC), Dilated cardiomyopathy.
It seems not to be expressed in bat cells in the samples analyzed. It seems to be downregulated after 23 h of Ebola infection in human cells.
Maximum read counts and DESeq normalized read counts for human and bat cell lines
| Source | Species | Mapping on | Mock3h | Mock7h | Mock23h | EBOV3h | EBOV7h | EBOV23h | MARV3h | MARV7h | MARV23h | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Read_Max |  | H. sapiens | Genome | 6 | 7 | 10 | 6 | 6 | 15 | 6 | 9 | 9 |
Read_Max |  | R. aegyptiacus | Transcriptome | 2 | NA | 2 | 1 | NA | 2 | NA | NA | 2 |
Read_Max |  | R. aegyptiacus | Genome | 5 | 4 | 3 | 2 | 2 | 2 | 1 | 3 | 2 |
DESeq | | H. sapiens | Genome | 97.4 | 81.57 | 106.24 | 64.88 | 85.55 | 47.06 | 76.44 | 88.13 | 102.12 |
DESeq | | R. aegyptiacus | Transcriptome | 2.68 | 1.0 | 3.44 | 1.92 | 1.0 | 3.57 | 1.0 | 1.0 | 2.75 |
DESeq | | R. aegyptiacus | Genome | 12.89 | 27.38 | 12.27 | 12.84 | 7.81 | 23.5 | 6.75 | 11.1 | 13.7 |