VCAM1

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
VCAM1 VCAM1, CD106, INCAM-100,CD106 vascular cell adhesion molecule 1 NM_001078 pdf NONE NONE NONE

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

This gene is a member of the Ig superfamily and encodes a cell surfacesialoglycoprotein expressed by cytokine-activated endothelium. This type Imembrane protein mediates leukocyte-endothelial cell adhesion and signaltransduction, and may play a role in the development of artherosclerosisand rheumatoid arthritis. Three alternatively spliced transcripts encodingdifferent isoforms have been described for this gene.

Very low expression level in the examined samples.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome5 5 2 4 4 0 4 8 1
Read_Max
batR. aegyptiacusTranscriptome 14 12 17 14 10 11 11 8 20
Read_Max
bat_genomeR. aegyptiacusGenome 12 9 10 7 4 6 9 10 18
DESeq
humanH. sapiensGenome 26.37 36.7 10.93 27.24 21.32 1.0 26.44 19.39 5.35
DESeq
batR. aegyptiacusTranscriptome 74.09 63.63 113.38 66.01 48.09 111.35 88.88 54.7 142.7
DESeq
bat_genomeR. aegyptiacusGenome 79.06 47.46 110.46 67.15 54.69 107.04 89.96 53.92 128.43

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 26.37 27.24 26.44 0.05 0.0 -0.04
7h 36.7 21.32 19.39 -0.78 -0.92 -0.14
23h 10.93 1.0 5.35 -3.45 -1.03 2.42

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 26.37 36.7 10.93 0.48 -1.27 -1.75
Ebov 27.24 21.32 1.0 -0.35 -4.77 -4.41
Marv 26.44 19.39 5.35 -0.45 -2.31 -1.86

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 74.09 66.01 88.88 -0.17 0.26 0.43
7h 63.63 48.09 54.7 -0.4 -0.22 0.19
23h 113.38 111.35 142.7 -0.03 0.33 0.36

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 74.09 63.63 113.38 -0.22 0.61 0.83
Ebov 66.01 48.09 111.35 -0.46 0.75 1.21
Marv 88.88 54.7 142.7 -0.7 0.68 1.38