ERBB2

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
ERBB2 CD340, HER-2, HER-2/neu, HER2, MLN_19, NEU, NGL, TKR1,NEU, CD340 erb-b2 receptor tyrosine kinase 2 NM_004448 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

The v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 2 (EC:2.7.10.1) is involved in the ErbB, Calcium and HIF-1 signaling pathway, Focal adhesion, Adherens junction, Pathways in cancer and Central carbon metabolism in cancer.

It does not present any particular differential expression pattern in the analyzed samples.

Show legend

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome62 78 55 58 59 145 84 54 67
Read_Max
batR. aegyptiacusTranscriptome 55 68 46 58 54 34 48 87 63
Read_Max
bat_genomeR. aegyptiacusGenome 70 60 40 64 49 26 40 111 63
DESeq
humanH. sapiensGenome 1261.37 1215.67 1049.42 1240.92 934.27 2340.71 1403.65 1044.15 1341.7
DESeq
batR. aegyptiacusTranscriptome 946.16 969.51 937.92 1037.54 1103.76 640.02 892.04 1152.73 871.34
DESeq
bat_genomeR. aegyptiacusGenome 1312.29 1382.72 1293.19 1450.61 1554.77 930.76 1304.46 1485.19 1120.75

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1261.37 1240.92 1403.65 -0.02 0.15 0.18
7h 1215.67 934.27 1044.15 -0.38 -0.22 0.16
23h 1049.42 2340.71 1341.7 1.16 0.35 -0.8

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1261.37 1215.67 1049.42 -0.05 -0.27 -0.21
Ebov 1240.92 934.27 2340.71 -0.41 0.92 1.33
Marv 1403.65 1044.15 1341.7 -0.43 -0.07 0.36

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 946.16 1037.54 892.04 0.13 -0.08 -0.22
7h 969.51 1103.76 1152.73 0.19 0.25 0.06
23h 937.92 640.02 871.34 -0.55 -0.11 0.45

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 946.16 969.51 937.92 0.04 -0.01 -0.05
Ebov 1037.54 1103.76 640.02 0.09 -0.7 -0.79
Marv 892.04 1152.73 871.34 0.37 -0.03 -0.4