ITGA6
| Name | Synonyms | Full Name | RefSeq ID | Description (.pdf) | IGV-img (humangenome) | Sashimi-img (humangenome) | UCSC-img (humangenome) | IGV-img (batgenome) |
|---|---|---|---|---|---|---|---|---|
| ITGA6 | ITGA6, CD49f, ITGA6B, VLA-6,CD49f | integrin, alpha 6 |  |
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NONE |
Download all snapshots for IGV, UCSC and Sashimi (zip archive)
Description
The ITGA6 protein product is the integrin alpha chain alpha 6. Integrins are integral cell-surface proteins composed of an alpha chain and a beta chain. A given chain may combine with multiple partners resulting in different integrins. For example, alpha 6 may combine with beta 4 in the integrin referred to as TSP180, or with beta 1 in the integrin VLA-6. Integrins are known to participate in cell adhesion as well as cell-surface mediated signalling.
In human cells ITGA6 is strongly reduced in late infection phase of Ebola virus, only moderately reduced in Marburg virus infected cells. In bat cells, no effect is seen. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\igvfigure{ \beginfigure[H] \centering \includegraphics[width=\textwidth]../../input/holy_folders/hg19.goi.00814/snapshots//hg19.goi.00814_igv.eps % \caption\igv of gene ITGA6. % <- say something about the figure here \endfigure }
\sashimifigure{ \beginfigure[H] \centering \includegraphics[width=\textwidth]../../input/holy_folders/hg19.goi.00814/snapshots//hg19.goi.00814_sashimi.eps % \caption\sashimi of gene ITGA6. % <- say something about the figure here \endfigure }
\ucscfigure{ \beginfigure[H] \centering \includegraphics[width=\textwidth]../../input/holy_folders/hg19.goi.00814/snapshots//hg19.goi.00814_ucsc.eps % \caption\ucsc of gene ITGA6. % <- say something about the figure here \endfigure }
\setcounterfigure0 \enddocument
Maximum read counts and DESeq normalized read counts for human and bat cell lines
| Source | Species | Mapping on | Mock3h | Mock7h | Mock23h | EBOV3h | EBOV7h | EBOV23h | MARV3h | MARV7h | MARV23h | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Read_Max |  | H. sapiens | Genome | 457 | 435 | 487 | 412 | 577 | 184 | 546 | 571 | 299 |
Read_Max |  | R. aegyptiacus | Transcriptome | 17 | 19 | 11 | 8 | 9 | 15 | 11 | 12 | 18 |
Read_Max |  | R. aegyptiacus | Genome | NA | NA | NA | NA | NA | NA | NA | NA | NA |
DESeq | | H. sapiens | Genome | 9051.88 | 8717.85 | 10118.88 | 9555.36 | 9001.18 | 3294.75 | 8852.87 | 8223.92 | 6849.11 |
DESeq | | R. aegyptiacus | Transcriptome | 97.62 | 93.58 | 68.18 | 68.76 | 95.18 | 90.82 | 88.88 | 81.97 | 140.95 |
DESeq | | R. aegyptiacus | Genome | NA | NA | NA | NA | NA | NA | NA | NA | NA |