PARD6A
| Name | Synonyms | Full Name | RefSeq ID | Description (.pdf) | IGV-img (humangenome) | Sashimi-img (humangenome) | UCSC-img (humangenome) | IGV-img (batgenome) |
|---|---|---|---|---|---|---|---|---|
| PARD6A | PAR-6, PAR-6A, TAX40, PAR6alpha, TIP-40 | par-6 family cell polarity regulator alpha | NM_016948 |  |
NONE |  |
 |
Download all snapshots for IGV, UCSC and Sashimi (zip archive)
Description
Homo sapiens par-6 partitioning defective 6 homolog alpha (C. elegans) (PARD6A), transcript variant 1 gene is a member of the PAR6 family and encodes a protein with a PSD95/Discs-large/ZO1 (PDZ) domain and a semi-Cdc42/Rac interactive binding (CRIB) domain. This cell membrane protein is involved in asymmetrical cell division and cell polarization processes as a member of a multi-protein complex. The protein also has a role in the epithelial-to-mesenchymal transition (EMT) that characterizes the invasive phenotype associated with metastatic carcinomas. Alternate transcriptional splice variants, encoding different isoforms, have been characterized.
No expression in HG19 and RAE.
Maximum read counts and DESeq normalized read counts for human and bat cell lines
| Source | Species | Mapping on | Mock3h | Mock7h | Mock23h | EBOV3h | EBOV7h | EBOV23h | MARV3h | MARV7h | MARV23h | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Read_Max |  | H. sapiens | Genome | 0 | 0 | 0 | 2 | 2 | 0 | 2 | 2 | 1 |
Read_Max |  | R. aegyptiacus | Transcriptome | 5 | 3 | 2 | 2 | 0 | 4 | 2 | 6 | 7 |
Read_Max |  | R. aegyptiacus | Genome | 19 | 22 | 16 | 18 | 13 | 12 | 8 | 35 | 32 |
DESeq | | H. sapiens | Genome | 1.0 | 1.0 | 1.0 | 3.28 | 2.63 | 1.0 | 4.51 | 4.2 | 2.09 |
DESeq | | R. aegyptiacus | Transcriptome | 15.28 | 10.98 | 3.44 | 9.24 | 1.0 | 7.42 | 4.34 | 12.57 | 14.12 |
DESeq | | R. aegyptiacus | Genome | 109.14 | 135.99 | 172.95 | 126.4 | 107.15 | 163.18 | 82.09 | 181.58 | 183.23 |