RIPK1

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
RIPK1 Receptor (TNFRSF)-Interacting Serine-Threonine Kinase 1,RIP receptor (TNFRSF)-interacting serine-threonine kinase 1 NM_003804 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

RIPK1 (receptor (TNFRSF)-interacting serine-threonine kinase 1) is a protein-coding gene. GO annotations related to this gene include protein kinase activity and identical protein binding. An important paralog of this gene is RIPK3.

The gene RIPK is expressed at low levels throughout all human cells datasets. Only two of the four annotated transcript isoforms are present.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome73 93 70 73 109 107 95 112 81
Read_Max
batR. aegyptiacusTranscriptome 78 66 53 66 49 81 58 70 71
Read_Max
bat_genomeR. aegyptiacusGenome 87 72 47 66 47 47 51 82 82
DESeq
humanH. sapiensGenome 1358.78 1347.23 1239.05 1467.92 1325.3 1245.86 1531.72 1251.18 1234.05
DESeq
batR. aegyptiacusTranscriptome 780.65 724.43 619.1 631.9 672.29 883.83 860.89 650.4 777.74
DESeq
bat_genomeR. aegyptiacusGenome 1047.6 888.04 747.57 1009.21 939.78 1194.45 1156.02 869.86 981.2

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1358.78 1467.92 1531.72 0.11 0.17 0.06
7h 1347.23 1325.3 1251.18 -0.02 -0.11 -0.08
23h 1239.05 1245.86 1234.05 0.01 -0.01 -0.01

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1358.78 1347.23 1239.05 -0.01 -0.13 -0.12
Ebov 1467.92 1325.3 1245.86 -0.15 -0.24 -0.09
Marv 1531.72 1251.18 1234.05 -0.29 -0.31 -0.02

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 780.65 631.9 860.89 -0.3 0.14 0.45
7h 724.43 672.29 650.4 -0.11 -0.16 -0.05
23h 619.1 883.83 777.74 0.51 0.33 -0.18

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 780.65 724.43 619.1 -0.11 -0.33 -0.23
Ebov 631.9 672.29 883.83 0.09 0.48 0.39
Marv 860.89 650.4 777.74 -0.4 -0.15 0.26