VCL
| Name | Synonyms | Full Name | RefSeq ID | Description (.pdf) | IGV-img (humangenome) | Sashimi-img (humangenome) | UCSC-img (humangenome) | IGV-img (batgenome) |
|---|---|---|---|---|---|---|---|---|
| VCL | CMD1W, CMH15, HEL114, MV, MVCL | vinculin | NM_003373, NM_014000 |  |
NONE |  |
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Download all snapshots for IGV, UCSC and Sashimi (zip archive)
Description
Vinculin is a cytoskeletal protein associated with cell-cell and cell-matrix junctions, where it is thought to function as one of several interacting proteins involved in anchoring F-actin to the membrane. Defects in VCL are the cause of cardiomyopathy dilated type 1W. Dilated cardiomyopathy is a disorder characterized by ventricular dilation and impaired systolic function, resulting in congestive heart failure and arrhythmia. Multiple alternatively spliced transcript variants have been found for this gene, but the biological validity of some variants has not been determined.
The gene is uniformly expressed in human cells, as is the bat cells homolog.
Maximum read counts and DESeq normalized read counts for human and bat cell lines
| Source | Species | Mapping on | Mock3h | Mock7h | Mock23h | EBOV3h | EBOV7h | EBOV23h | MARV3h | MARV7h | MARV23h | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Read_Max |  | H. sapiens | Genome | 238 | 264 | 268 | 256 | 343 | 297 | 342 | 420 | 327 |
Read_Max |  | R. aegyptiacus | Transcriptome | 813 | 641 | 608 | 681 | 623 | 744 | 447 | 871 | 813 |
Read_Max |  | R. aegyptiacus | Genome | 890 | 719 | 528 | 626 | 530 | 430 | 389 | 1073 | 905 |
DESeq | | H. sapiens | Genome | 5926.34 | 6131.46 | 5281.83 | 6321.53 | 5660.76 | 7226.73 | 6801.09 | 7335.04 | 6856.72 |
DESeq | | R. aegyptiacus | Transcriptome | 10879.14 | 10234.29 | 11336.86 | 10178.65 | 10339.74 | 10893.93 | 8320.69 | 10570.69 | 11072.19 |
DESeq | | R. aegyptiacus | Genome | 14427.44 | 13156.35 | 13531.04 | 14022.27 | 13614.6 | 14636.26 | 11916.67 | 13453.91 | 14477.35 |