CXCL10

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
CXCL10 Gamma-IP10, IP-10,IFI10, crg-2, mob-1, C7, gIP-10 chemokine (C-X-C motif) ligand 10 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Chemotactic for monocytes and T-lymphocytes. Does not show a clear pattern, because of low quantity of reads in it. Gene is upstream of CXCL11, and the annotations for CXCL10 and CXCL11 are merged.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome2 0 0 1 1 0 4 0 2
Read_Max
batR. aegyptiacusTranscriptome NA NA NA NA NA NA NA NA NA
Read_Max
bat_genomeR. aegyptiacusGenome 0 0 0 0 0 0 0 0 0
DESeq
humanH. sapiensGenome 3.03 1.0 1.0 3.28 2.63 1.0 6.26 1.0 7.52
DESeq
batR. aegyptiacusTranscriptome 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
DESeq
bat_genomeR. aegyptiacusGenome 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 3.03 3.28 6.26 0.11 1.05 0.93
7h 1.0 2.63 1.0 1.4 0.0 -1.4
23h 1.0 1.0 7.52 0.0 2.91 2.91

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 3.03 1.0 1.0 -1.6 -1.6 0.0
Ebov 3.28 2.63 1.0 -0.32 -1.71 -1.4
Marv 6.26 1.0 7.52 -2.65 0.26 2.91

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1.0 1.0 1.0 0.0 0.0 0.0
7h 1.0 1.0 1.0 0.0 0.0 0.0
23h 1.0 1.0 1.0 0.0 0.0 0.0

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1.0 1.0 1.0 0.0 0.0 0.0
Ebov 1.0 1.0 1.0 0.0 0.0 0.0
Marv 1.0 1.0 1.0 0.0 0.0 0.0