TMEM216

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
TMEM216 MGC13379, HSPC244, JBTS2 transmembrane protein 216 NM_016499 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

This locus encodes a transmembrane domain-containing protein. Mutations at this locus have been associated with Meckel-Gruber Syndrome Type 2, and Joubert Syndrome 2, also known as Cerebello-oculorenal Syndrome 2.

The gene is slightly expressed in all conditions.

Show legend

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome28 32 25 28 64 49 55 75 35
Read_Max
batR. aegyptiacusTranscriptome 29 22 24 30 32 40 48 51 40
Read_Max
bat_genomeR. aegyptiacusGenome 55 75 32 30 59 35 40 88 75
DESeq
humanH. sapiensGenome 183.66 157.04 156.87 152.71 186.35 207.6 162.41 170.46 186.94
DESeq
batR. aegyptiacusTranscriptome 40.49 41.85 46.2 50.45 61.23 71.57 71.08 71.23 57.86
DESeq
bat_genomeR. aegyptiacusGenome 242.35 303.01 304.61 198.48 340.42 295.02 275.51 338.59 297.1

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 183.66 152.71 162.41 -0.27 -0.18 0.09
7h 157.04 186.35 170.46 0.25 0.12 -0.13
23h 156.87 207.6 186.94 0.4 0.25 -0.15

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 183.66 157.04 156.87 -0.23 -0.23 -0.0
Ebov 152.71 186.35 207.6 0.29 0.44 0.16
Marv 162.41 170.46 186.94 0.07 0.2 0.13

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 40.49 50.45 71.08 0.32 0.81 0.49
7h 41.85 61.23 71.23 0.55 0.77 0.22
23h 46.2 71.57 57.86 0.63 0.32 -0.31

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 40.49 41.85 46.2 0.05 0.19 0.14
Ebov 50.45 61.23 71.57 0.28 0.5 0.23
Marv 71.08 71.23 57.86 0.0 -0.3 -0.3