CHMP5

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
CHMP5 HSPC177, CGI-34, Vps60 charged multivesicular body protein 5 NM_016410 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

CHMP5 belongs to the chromatin-modifying protein/charged multivesicular body protein (CHMP) family. These proteins are components of ESCRT-III (endosomal sorting complex required for transport III), a complex involved in degradation of surface receptor proteins and formation of endocytic multivesicular bodies (MVBs).

The gene is stronger expressed in bat cells than in human cells.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome109 169 172 128 204 257 193 215 152
Read_Max
batR. aegyptiacusTranscriptome 286 287 243 255 248 276 231 320 319
Read_Max
bat_genomeR. aegyptiacusGenome 313 257 198 263 212 166 198 373 364
DESeq
humanH. sapiensGenome 687.0 745.51 835.97 678.57 814.76 908.99 772.94 720.42 814.34
DESeq
batR. aegyptiacusTranscriptome 1167.11 1217.3 1277.51 1277.44 1292.11 1136.62 1262.47 1269.23 1154.74
DESeq
bat_genomeR. aegyptiacusGenome 1411.98 1513.23 1411.46 1467.4 1564.82 1489.47 1567.6 1522.46 1355.35

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 687.0 678.57 772.94 -0.02 0.17 0.19
7h 745.51 814.76 720.42 0.13 -0.05 -0.18
23h 835.97 908.99 814.34 0.12 -0.04 -0.16

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 687.0 745.51 835.97 0.12 0.28 0.17
Ebov 678.57 814.76 908.99 0.26 0.42 0.16
Marv 772.94 720.42 814.34 -0.1 0.08 0.18

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1167.11 1277.44 1262.47 0.13 0.11 -0.02
7h 1217.3 1292.11 1269.23 0.09 0.06 -0.03
23h 1277.51 1136.62 1154.74 -0.17 -0.15 0.02

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1167.11 1217.3 1277.51 0.06 0.13 0.07
Ebov 1277.44 1292.11 1136.62 0.02 -0.17 -0.18
Marv 1262.47 1269.23 1154.74 0.01 -0.13 -0.14