ARL13B

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
ARL13B DKFZp761H079, JBTS8 ADP-ribosylation factor-like 13B NM_182896 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Homo sapiens syntaxin 19.

The human cells gene is downregulated at late time points during viral infection but not in mock infection.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome115 106 93 110 166 89 127 129 57
Read_Max
batR. aegyptiacusTranscriptome 148 116 71 103 91 78 119 110 85
Read_Max
bat_genomeR. aegyptiacusGenome 136 102 60 115 65 48 106 140 96
DESeq
humanH. sapiensGenome 1492.74 1135.1 1084.17 1350.43 1229.37 944.52 1186.1 1020.97 837.17
DESeq
batR. aegyptiacusTranscriptome 947.0 893.26 594.67 716.14 773.04 663.12 928.75 725.58 606.3
DESeq
bat_genomeR. aegyptiacusGenome 1423.15 1207.48 939.48 1356.8 1186.45 1009.08 1456.27 1237.79 973.49

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1492.74 1350.43 1186.1 -0.14 -0.33 -0.19
7h 1135.1 1229.37 1020.97 0.12 -0.15 -0.27
23h 1084.17 944.52 837.17 -0.2 -0.37 -0.17

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1492.74 1135.1 1084.17 -0.4 -0.46 -0.07
Ebov 1350.43 1229.37 944.52 -0.14 -0.52 -0.38
Marv 1186.1 1020.97 837.17 -0.22 -0.5 -0.29

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 947.0 716.14 928.75 -0.4 -0.03 0.38
7h 893.26 773.04 725.58 -0.21 -0.3 -0.09
23h 594.67 663.12 606.3 0.16 0.03 -0.13

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 947.0 893.26 594.67 -0.08 -0.67 -0.59
Ebov 716.14 773.04 663.12 0.11 -0.11 -0.22
Marv 928.75 725.58 606.3 -0.36 -0.62 -0.26