PLD1

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
PLD1 phospholipase D1, phosphatidylcholine-specific NM_002662 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

This gene encodes a phosphatidylcholine-specific phospholipase which catalyzes the hydrolysis of phosphatidylcholine in order to yield phosphatidic acid and choline. The enzyme may play a role in signal transduction and subcellular trafficking. Alternative splicing results in multiple transcript variants with both catalytic and regulatory properties.

It is higher expressed in human cells than in bat cells.

Show legend

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome110 151 170 114 191 109 110 222 126
Read_Max
batR. aegyptiacusTranscriptome 37 31 28 36 28 47 29 45 38
Read_Max
bat_genomeR. aegyptiacusGenome 42 37 21 28 22 25 24 50 39
DESeq
humanH. sapiensGenome 2990.56 4054.99 5027.67 3084.27 4289.32 2044.63 2973.85 4028.13 3507.69
DESeq
batR. aegyptiacusTranscriptome 442.91 370.43 395.56 546.74 502.55 406.49 435.95 647.1 398.12
DESeq
bat_genomeR. aegyptiacusGenome 669.46 720.11 543.38 577.68 758.97 580.91 639.86 815.94 555.67

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 2990.56 3084.27 2973.85 0.04 -0.01 -0.05
7h 4054.99 4289.32 4028.13 0.08 -0.01 -0.09
23h 5027.67 2044.63 3507.69 -1.3 -0.52 0.78

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 2990.56 4054.99 5027.67 0.44 0.75 0.31
Ebov 3084.27 4289.32 2044.63 0.48 -0.59 -1.07
Marv 2973.85 4028.13 3507.69 0.44 0.24 -0.2

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 442.91 546.74 435.95 0.3 -0.02 -0.33
7h 370.43 502.55 647.1 0.44 0.8 0.36
23h 395.56 406.49 398.12 0.04 0.01 -0.03

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 442.91 370.43 395.56 -0.26 -0.16 0.09
Ebov 546.74 502.55 406.49 -0.12 -0.43 -0.31
Marv 435.95 647.1 398.12 0.57 -0.13 -0.7