RAB4A

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
RAB4A HRES-1/RAB4 RAB4A, member RAS oncogene family NM_004578 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

This gene is a member of the largest group in the Ras superfamily of small GTPases, which regulate membrane trafficking. The encoded protein is associated with early endosomes and is involved in their sorting and recycling. The protein also plays a role in regulating the recycling of receptors from endosomes to the plasma membrane. Alternatively spliced transcript variants have been observed for this gene.

The gene is slightly expressed in all conditions.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome201 156 175 163 272 166 222 200 153
Read_Max
batR. aegyptiacusTranscriptome 128 146 103 142 134 150 140 154 174
Read_Max
bat_genomeR. aegyptiacusGenome 317 241 137 236 141 112 179 296 298
DESeq
humanH. sapiensGenome 1361.83 1248.3 1304.58 1366.4 1324.48 852.4 1221.19 1268.77 1336.26
DESeq
batR. aegyptiacusTranscriptome 502.56 548.34 427.32 502.79 510.22 506.57 609.49 509.94 560.81
DESeq
bat_genomeR. aegyptiacusGenome 2961.46 2907.81 2131.14 3144.15 2869.58 3080.77 3424.2 2816.54 2855.4

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1361.83 1366.4 1221.19 0.0 -0.16 -0.16
7h 1248.3 1324.48 1268.77 0.09 0.02 -0.06
23h 1304.58 852.4 1336.26 -0.61 0.03 0.65

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1361.83 1248.3 1304.58 -0.13 -0.06 0.06
Ebov 1366.4 1324.48 852.4 -0.04 -0.68 -0.64
Marv 1221.19 1268.77 1336.26 0.06 0.13 0.07

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 502.56 502.79 609.49 0.0 0.28 0.28
7h 548.34 510.22 509.94 -0.1 -0.1 -0.0
23h 427.32 506.57 560.81 0.25 0.39 0.15

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 502.56 548.34 427.32 0.13 -0.23 -0.36
Ebov 502.79 510.22 506.57 0.02 0.01 -0.01
Marv 609.49 509.94 560.81 -0.26 -0.12 0.14