VPS45
| Name | Synonyms | Full Name | RefSeq ID | Description (.pdf) | IGV-img (humangenome) | Sashimi-img (humangenome) | UCSC-img (humangenome) | IGV-img (batgenome) |
|---|---|---|---|---|---|---|---|---|
| VPS45 | Vacuolar Protein Sorting 45 Homolog (S. Cerevisiae), H1VPS45, VPS45A, SCN5,h-vps45, H1 | vacuolar protein sorting 45 homolog (S. cerevisiae) | NM_007259 |  |
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Download all snapshots for IGV, UCSC and Sashimi (zip archive)
Description
Vesicle mediated protein sorting plays an important role in segregation ofintracellular molecules into distinct organelles. Genetic studies in yeasthave identified more than 40 vacuolar protein sorting (VPS) genes involvedin vesicle transport to vacuoles. This gene is a member of the Sec1 domainfamily, and shows a high degree of sequence similarity to mouse, rat andyeast Vps45. The exact function of this gene is not known, but its highexpression in peripheral blood mononuclear cells suggests a role intrafficking proteins, including inflammatory mediators. Multiplealternatively spliced transcript variants have been found for this gene.
Expression in all samples, some variation in human cells.
Maximum read counts and DESeq normalized read counts for human and bat cell lines
| Source | Species | Mapping on | Mock3h | Mock7h | Mock23h | EBOV3h | EBOV7h | EBOV23h | MARV3h | MARV7h | MARV23h | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Read_Max |  | H. sapiens | Genome | 78 | 112 | 76 | 81 | 140 | 156 | 107 | 149 | 70 |
Read_Max |  | R. aegyptiacus | Transcriptome | 47 | 41 | 31 | 50 | 52 | 45 | 48 | 56 | 52 |
Read_Max |  | R. aegyptiacus | Genome | 61 | 67 | 39 | 42 | 46 | 28 | 43 | 86 | 76 |
DESeq | | H. sapiens | Genome | 1068.56 | 1216.69 | 1047.44 | 1008.22 | 1184.66 | 1449.83 | 1019.43 | 1124.89 | 890.45 |
DESeq | | R. aegyptiacus | Transcriptome | 332.02 | 321.41 | 311.27 | 384.67 | 400.71 | 252.5 | 325.82 | 341.4 | 364.88 |
DESeq | | R. aegyptiacus | Genome | 1045.88 | 1212.96 | 1095.69 | 911.45 | 1118.37 | 787.16 | 1031.2 | 1181.49 | 1043.7 |