NEDD4

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
NEDD4 KIAA0093, MGC176705, NEDD4-1, RPF1 neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase NM_198400 pdf NONE

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Description

The long isoform is predominant in all samples. Expressen is also present upstream to the 5 prime start site. In the bat homolog the gene is downregulated in the control condition.

Homo sapiens neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase (NEDD4), transcript variant 3, mRNA.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome139 151 166 119 190 385 156 224 159
Read_Max
batR. aegyptiacusTranscriptome 1060 864 351 709 610 607 729 827 476
Read_Max
bat_genomeR. aegyptiacusGenome 1173 759 284 786 531 362 633 1028 524
DESeq
humanH. sapiensGenome 2714.54 2764.86 3425.25 2431.8 2935.75 6335.85 2394.89 2523.75 3610.99
DESeq
batR. aegyptiacusTranscriptome 17194.47 14021.18 8550.54 14256.12 14324.78 12392.69 16398.98 13411.19 8269.62
DESeq
bat_genomeR. aegyptiacusGenome 23011.03 18504.69 10807.42 19637.1 18963.11 16996.44 22090.31 17382.96 11378.79

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 2714.54 2431.8 2394.89 -0.16 -0.18 -0.02
7h 2764.86 2935.75 2523.75 0.09 -0.13 -0.22
23h 3425.25 6335.85 3610.99 0.89 0.08 -0.81

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 2714.54 2764.86 3425.25 0.03 0.34 0.31
Ebov 2431.8 2935.75 6335.85 0.27 1.38 1.11
Marv 2394.89 2523.75 3610.99 0.08 0.59 0.52

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 17194.47 14256.12 16398.98 -0.27 -0.07 0.2
7h 14021.18 14324.78 13411.19 0.03 -0.06 -0.1
23h 8550.54 12392.69 8269.62 0.54 -0.05 -0.58

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 17194.47 14021.18 8550.54 -0.29 -1.01 -0.71
Ebov 14256.12 14324.78 12392.69 0.01 -0.2 -0.21
Marv 16398.98 13411.19 8269.62 -0.29 -0.99 -0.7