SMAP1

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
SMAP1 FLJ13159, SMAP-1 small ArfGAP 1 NM_001044305 pdf NONE

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

The protein encoded by this gene is similar to the mouse stromal membrane-associated protein-1. This similarity suggests that this human gene product is also a type II membrane glycoprotein involved in the erythropoietic stimulatory activity of stromal cells. Alternate splicing results in multiple transcript variants encoding different isoforms.

The gene SMAP1 is moderately expressed in human cells and bat cells datasets without significant changes in expression profiles.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome145 138 100 145 178 188 161 170 94
Read_Max
batR. aegyptiacusTranscriptome 246 206 153 166 157 212 211 196 208
Read_Max
bat_genomeR. aegyptiacusGenome 279 209 137 204 148 127 184 270 250
DESeq
humanH. sapiensGenome 1752.52 1405.36 1201.32 1592.25 1448.05 1676.17 1587.86 1338.31 1304.73
DESeq
batR. aegyptiacusTranscriptome 1773.7 1653.0 1471.73 1421.2 1479.37 1855.2 1836.47 1377.46 1601.72
DESeq
bat_genomeR. aegyptiacusGenome 3829.44 3731.97 3475.65 3463.1 3712.26 3647.32 4154.02 3820.41 3440.18

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1752.52 1592.25 1587.86 -0.14 -0.14 -0.0
7h 1405.36 1448.05 1338.31 0.04 -0.07 -0.11
23h 1201.32 1676.17 1304.73 0.48 0.12 -0.36

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1752.52 1405.36 1201.32 -0.32 -0.54 -0.23
Ebov 1592.25 1448.05 1676.17 -0.14 0.07 0.21
Marv 1587.86 1338.31 1304.73 -0.25 -0.28 -0.04

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1773.7 1421.2 1836.47 -0.32 0.05 0.37
7h 1653.0 1479.37 1377.46 -0.16 -0.26 -0.1
23h 1471.73 1855.2 1601.72 0.33 0.12 -0.21

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1773.7 1653.0 1471.73 -0.1 -0.27 -0.17
Ebov 1421.2 1479.37 1855.2 0.06 0.38 0.33
Marv 1836.47 1377.46 1601.72 -0.41 -0.2 0.22