VPS25
| Name | Synonyms | Full Name | RefSeq ID | Description (.pdf) | IGV-img (humangenome) | Sashimi-img (humangenome) | UCSC-img (humangenome) | IGV-img (batgenome) |
|---|---|---|---|---|---|---|---|---|
| VPS25 | DERP9, EAP20, FAP20,MGC10540, DERP9 | vacuolar protein sorting 25 homolog (S. cerevisiae) | NM_032353 |  |
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Download all snapshots for IGV, UCSC and Sashimi (zip archive)
Description
This gene encodes a protein that is a subunit of the endosomal sorting complex required for transport II (ESCRT-II). This protein complex functions in sorting of ubiquitinated membrane proteins during endocytosis. A pseudogene of this gene is present on chromosome 1.
The gene VPS25 is expressed in all human cells and bat cells datasets, usually it goes down at 23 h datasets but not in the bat cells Marburg dataset.
Maximum read counts and DESeq normalized read counts for human and bat cell lines
| Source | Species | Mapping on | Mock3h | Mock7h | Mock23h | EBOV3h | EBOV7h | EBOV23h | MARV3h | MARV7h | MARV23h | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Read_Max |  | H. sapiens | Genome | 105 | 122 | 90 | 144 | 163 | 138 | 143 | 204 | 88 |
Read_Max |  | R. aegyptiacus | Transcriptome | 67 | 123 | 37 | 77 | 62 | 58 | 46 | 88 | 85 |
Read_Max |  | R. aegyptiacus | Genome | 95 | 89 | 73 | 118 | 55 | 51 | 60 | 136 | 107 |
DESeq | | H. sapiens | Genome | 567.25 | 691.45 | 552.02 | 857.65 | 715.58 | 607.64 | 756.27 | 805.15 | 529.45 |
DESeq | | R. aegyptiacus | Transcriptome | 78.29 | 159.85 | 74.29 | 88.9 | 88.61 | 88.26 | 78.87 | 96.01 | 98.97 |
DESeq | | R. aegyptiacus | Genome | 440.87 | 430.79 | 531.11 | 485.84 | 450.92 | 489.53 | 437.44 | 475.77 | 536.83 |