HSPA4

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
HSPA4 HSP70B,HS24/P52, HSPH2 heat shock 70kDa protein 4 NM_002154, NM_198431 pdf

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Description

Homo sapiens heat shock 70kDa protein 4 (HSPA4), mRNA.

The gene is highly expressed in bat cells and human cells, and upregulated in human cells Ebola infected cells after 7 h. 3' UTR is much shorter in Ebola infected cells after 23 h.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome1205 1216 1426 1057 1831 1838 1379 1487 1180
Read_Max
batR. aegyptiacusTranscriptome 1481 1176 890 1400 1054 1141 993 1354 1222
Read_Max
bat_genomeR. aegyptiacusGenome 1606 1470 770 1144 905 683 874 1666 1389
DESeq
humanH. sapiensGenome 19708.16 17913.03 19110.89 17966.76 19454.91 22599.33 17760.89 17088.71 17002.76
DESeq
batR. aegyptiacusTranscriptome 17472.56 15045.05 17637.55 17938.94 18120.36 19039.57 18627.13 18743.54 18054.99
DESeq
bat_genomeR. aegyptiacusGenome 19802.07 19675.66 18377.98 18043.3 20224.35 20680.3 20903.93 19783.21 19909.88

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 19708.16 17966.76 17760.89 -0.13 -0.15 -0.02
7h 17913.03 19454.91 17088.71 0.12 -0.07 -0.19
23h 19110.89 22599.33 17002.76 0.24 -0.17 -0.41

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 19708.16 17913.03 19110.89 -0.14 -0.04 0.09
Ebov 17966.76 19454.91 22599.33 0.11 0.33 0.22
Marv 17760.89 17088.71 17002.76 -0.06 -0.06 -0.01

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 17472.56 17938.94 18627.13 0.04 0.09 0.05
7h 15045.05 18120.36 18743.54 0.27 0.32 0.05
23h 17637.55 19039.57 18054.99 0.11 0.03 -0.08

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 17472.56 15045.05 17637.55 -0.22 0.01 0.23
Ebov 17938.94 18120.36 19039.57 0.01 0.09 0.07
Marv 18627.13 18743.54 18054.99 0.01 -0.05 -0.05