HSPA4

Name	Synonyms	Full Name	RefSeq ID	Description (.pdf)	IGV-img (human_genome)	Sashimi-img (human_genome)	UCSC-img (human_genome)	IGV-img (bat_genome)
HSPA4	HSP70B,HS24/P52, HSPH2	heat shock 70kDa protein 4	NM_002154, NM_198431	pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Homo sapiens heat shock 70kDa protein 4 (HSPA4), mRNA.

The gene is highly expressed in bat cells and human cells, and upregulated in human cells Ebola infected cells after 7 h. 3' UTR is much shorter in Ebola infected cells after 23 h.

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source		Species	Mapping on	Mock_3h	Mock_7h	Mock_23h	EBOV_3h	EBOV_7h	EBOV_23h	MARV_3h	MARV_7h	MARV_23h
Read_Max		H. sapiens	Genome	1205	1216	1426	1057	1831	1838	1379	1487	1180
Read_Max		R. aegyptiacus	Transcriptome	1481	1176	890	1400	1054	1141	993	1354	1222
Read_Max		R. aegyptiacus	Genome	1606	1470	770	1144	905	683	874	1666	1389
DESeq		H. sapiens	Genome	19708.16	17913.03	19110.89	17966.76	19454.91	22599.33	17760.89	17088.71	17002.76
DESeq		R. aegyptiacus	Transcriptome	17472.56	15045.05	17637.55	17938.94	18120.36	19039.57	18627.13	18743.54	18054.99
DESeq		R. aegyptiacus	Genome	19802.07	19675.66	18377.98	18043.3	20224.35	20680.3	20903.93	19783.21	19909.88

Human Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	19708.16	17966.76	17760.89	-0.13	-0.15	-0.02
7h	17913.03	19454.91	17088.71	0.12	-0.07	-0.19
23h	19110.89	22599.33	17002.76	0.24	-0.17	-0.41

Human Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	19708.16	17913.03	19110.89	-0.14	-0.04	0.09
Ebov	17966.76	19454.91	22599.33	0.11	0.33	0.22
Marv	17760.89	17088.71	17002.76	-0.06	-0.06	-0.01

Bat Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	17472.56	17938.94	18627.13	0.04	0.09	0.05
7h	15045.05	18120.36	18743.54	0.27	0.32	0.05
23h	17637.55	19039.57	18054.99	0.11	0.03	-0.08

Bat Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	17472.56	15045.05	17637.55	-0.22	0.01	0.23
Ebov	17938.94	18120.36	19039.57	0.01	0.09	0.07
Marv	18627.13	18743.54	18054.99	0.01	-0.05	-0.05