RABEP1

Name	Synonyms	Full Name	RefSeq ID	Description (.pdf)	IGV-img (human_genome)	Sashimi-img (human_genome)	UCSC-img (human_genome)	IGV-img (bat_genome)
RABEP1	RAB5EP, RABPT5,neurocrescin, RAB5EP, rabaptin-5	rabaptin, RAB GTPase binding effector protein 1	NM_004703	pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Homo sapiens rabaptin, RAB GTPase binding effector protein 1 (RABEP1), transcript variant 2, mRNA.

The gene is upregulated upon Ebola virus infection in human cells. The bat cells homolog is uniformly highly expressed.

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source		Species	Mapping on	Mock_3h	Mock_7h	Mock_23h	EBOV_3h	EBOV_7h	EBOV_23h	MARV_3h	MARV_7h	MARV_23h
Read_Max		H. sapiens	Genome	186	278	274	199	357	382	241	293	250
Read_Max		R. aegyptiacus	Transcriptome	343	266	201	272	235	313	274	286	318
Read_Max		R. aegyptiacus	Genome	418	385	207	324	256	213	292	477	384
DESeq		H. sapiens	Genome	3929.24	4711.79	5013.77	4101.76	5223.4	6731.94	3943.16	4112.86	5045.2
DESeq		R. aegyptiacus	Transcriptome	3601.0	3098.04	2953.45	3654.52	3752.78	4197.0	4069.07	3618.97	3162.2
DESeq		R. aegyptiacus	Genome	5618.69	5604.8	4335.91	5127.01	5834.03	6434.37	6434.57	5281.81	4820.36

Human Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	3929.24	4101.76	3943.16	0.06	0.01	-0.06
7h	4711.79	5223.4	4112.86	0.15	-0.2	-0.34
23h	5013.77	6731.94	5045.2	0.43	0.01	-0.42

Human Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	3929.24	4711.79	5013.77	0.26	0.35	0.09
Ebov	4101.76	5223.4	6731.94	0.35	0.71	0.37
Marv	3943.16	4112.86	5045.2	0.06	0.36	0.29

Bat Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	3601.0	3654.52	4069.07	0.02	0.18	0.16
7h	3098.04	3752.78	3618.97	0.28	0.22	-0.05
23h	2953.45	4197.0	3162.2	0.51	0.1	-0.41

Bat Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	3601.0	3098.04	2953.45	-0.22	-0.29	-0.07
Ebov	3654.52	3752.78	4197.0	0.04	0.2	0.16
Marv	4069.07	3618.97	3162.2	-0.17	-0.36	-0.19