ARAP1
| Name | Synonyms | Full Name | RefSeq ID | Description (.pdf) | IGV-img (humangenome) | Sashimi-img (humangenome) | UCSC-img (humangenome) | IGV-img (batgenome) |
|---|---|---|---|---|---|---|---|---|
| ARAP1 | DOC2 | ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 | NM_001040118 |  |
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NONE |
Download all snapshots for IGV, UCSC and Sashimi (zip archive)
Description
Homo sapiens ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 (ARAP1). The protein encoded by this gene contains SAM, ARF-GAP, RHO-GAP, ankyrin repeat, RAS-associating, and pleckstrin homology (PH) domains. In vitro, this protein displays RHO-GAP and phosphatidylinositol (3,4,5) trisphosphate (PIP3)-dependent ARF-GAP activity. The encoded protein associates with the Golgi, and the ARF-GAP activity mediates changes in the Golgi and the formation of filopodia. It is thought to regulate the cell-specific trafficking of a receptor protein involved in apoptosis. Multiple transcript variants encoding different isoforms have been found for this gene. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
This gene is normally expressed in human cells cells and weakly expressed in bat cells cells. It should be noted that in human cells, there is an overlap with the gene STARD10.
\igvfigure{ \beginfigure[H] \centering \includegraphics[width=\textwidth]../../input/holy_folders/hg19.goi.01265/snapshots//hg19.goi.01265_igv1.eps % \includegraphics[width=\textwidth]../../input/holy_folders/hg19.goi.01265/snapshots//hg19.goi.01265_igv2.eps % \caption\igv of gene ARAP1. % <- say something about the figure here \endfigure }
\sashimifigure{ \beginfigure[H] \centering \includegraphics[width=\textwidth]../../input/holy_folders/hg19.goi.01265/snapshots//hg19.goi.01265_sashimi1.eps % \includegraphics[width=\textwidth]../../input/holy_folders/hg19.goi.01265/snapshots//hg19.goi.01265_sashimi2.eps % \caption\sashimi of gene ARAP1. % <- say something about the figure here \endfigure }
\ucscfigure{ \beginfigure[H] \centering \includegraphics[width=\textwidth]../../input/holy_folders/hg19.goi.01265/snapshots//hg19.goi.01265_ucsc.eps % \caption\ucsc of gene ARAP1. % <- say something about the figure here \endfigure }
\setcounterfigure0\enddocument
Maximum read counts and DESeq normalized read counts for human and bat cell lines
| Source | Species | Mapping on | Mock3h | Mock7h | Mock23h | EBOV3h | EBOV7h | EBOV23h | MARV3h | MARV7h | MARV23h | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Read_Max |  | H. sapiens | Genome | 53 | 59 | 73 | 60 | 78 | 120 | 56 | 95 | 63 |
Read_Max |  | R. aegyptiacus | Transcriptome | 33 | 27 | 48 | 42 | 37 | 48 | 23 | 50 | 74 |
Read_Max |  | R. aegyptiacus | Genome | NA | NA | NA | NA | NA | NA | NA | NA | NA |
DESeq | | H. sapiens | Genome | 1256.29 | 1777.62 | 1709.65 | 1443.96 | 1465.94 | 2584.16 | 1527.34 | 1790.75 | 1861.45 |
DESeq | | R. aegyptiacus | Transcriptome | 342.94 | 339.57 | 849.97 | 540.33 | 537.59 | 631.04 | 298.01 | 527.29 | 927.32 |
DESeq | | R. aegyptiacus | Genome | NA | NA | NA | NA | NA | NA | NA | NA | NA |