ZFYVE9

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
ZFYVE9 MADHIP, SMADIP,sara,SMADIP, SARA, PPP1R173 zinc finger, FYVE domain containing 9 NM_007324 pdf

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Description

Homo sapiens zinc finger, FYVE domain containing 9 (ZFYVE9). This geneencodes a double zinc finger motif-containing protein that participates inthe transforming growth factor-beta (TGFB) signalling pathway. The encodedprotein interacts directly with SMAD2 and SMAD3, and recruits SMAD2 to theTGFB receptor. There are multiple pseudogenes for this gene on chromosomes2, 15, and X. Alternative splicing results in multiple transcript variants.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome109 132 172 114 232 195 141 144 116
Read_Max
batR. aegyptiacusTranscriptome 67 92 50 82 66 68 53 75 63
Read_Max
bat_genomeR. aegyptiacusGenome 98 84 45 85 56 46 53 105 76
DESeq
humanH. sapiensGenome 1848.93 2194.75 2507.88 2047.39 2388.64 1659.06 1987.87 2077.71 1826.66
DESeq
batR. aegyptiacusTranscriptome 1157.87 1151.04 1091.83 1364.43 1314.01 1281.62 1044.44 1283.28 1137.25
DESeq
bat_genomeR. aegyptiacusGenome 1488.46 1631.88 1317.73 1532.57 1607.23 1601.74 1302.21 1504.22 1390.46

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1848.93 2047.39 1987.87 0.15 0.1 -0.04
7h 2194.75 2388.64 2077.71 0.12 -0.08 -0.2
23h 2507.88 1659.06 1826.66 -0.6 -0.46 0.14

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1848.93 2194.75 2507.88 0.25 0.44 0.19
Ebov 2047.39 2388.64 1659.06 0.22 -0.3 -0.53
Marv 1987.87 2077.71 1826.66 0.06 -0.12 -0.19

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1157.87 1364.43 1044.44 0.24 -0.15 -0.39
7h 1151.04 1314.01 1283.28 0.19 0.16 -0.03
23h 1091.83 1281.62 1137.25 0.23 0.06 -0.17

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1157.87 1151.04 1091.83 -0.01 -0.08 -0.08
Ebov 1364.43 1314.01 1281.62 -0.05 -0.09 -0.04
Marv 1044.44 1283.28 1137.25 0.3 0.12 -0.17