AGAP3
| Name | Synonyms | Full Name | RefSeq ID | Description (.pdf) | IGV-img (humangenome) | Sashimi-img (humangenome) | UCSC-img (humangenome) | IGV-img (batgenome) |
|---|---|---|---|---|---|---|---|---|
| AGAP3 | AGAP-3, CENTG3, CRAG, MRIP-1, cnt-g3 | ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 | NM_031946 |  |
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Download all snapshots for IGV, UCSC and Sashimi (zip archive)
Description
Homo sapiens ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 (AGAP3), transcript variant 2, mRNA.
The gene is upregulated in early human cells Ebola virus infection then goes slightly down again. In Marburg virus infected cells it is also upregulated, but not significantly, and also transiently, i.e., down again after 23 h. In bat cells, expression upon Ebola virus infection goes down and then up again, albeit not significantly, while in Marburg virus infected cells it goes two-fold up at 7h and stays at this level.
Maximum read counts and DESeq normalized read counts for human and bat cell lines
| Source | Species | Mapping on | Mock3h | Mock7h | Mock23h | EBOV3h | EBOV7h | EBOV23h | MARV3h | MARV7h | MARV23h | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Read_Max |  | H. sapiens | Genome | 118 | 103 | 106 | 94 | 164 | 180 | 115 | 144 | 82 |
Read_Max |  | R. aegyptiacus | Transcriptome | NA | NA | NA | NA | NA | NA | NA | NA | NA |
Read_Max |  | R. aegyptiacus | Genome | 78 | 62 | 54 | 82 | 51 | 57 | 38 | 119 | 99 |
DESeq | | H. sapiens | Genome | 1418.66 | 1646.05 | 1435.63 | 1482.75 | 1465.94 | 2252.54 | 1507.16 | 1816.32 | 1491.75 |
DESeq | | R. aegyptiacus | Transcriptome | NA | NA | NA | NA | NA | NA | NA | NA | NA |
DESeq | | R. aegyptiacus | Genome | 366.1 | 324.92 | 393.87 | 473.99 | 401.81 | 434.7 | 312.62 | 394.89 | 400.7 |