ARF1

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
ARF1 ADP-ribosylation factor 1 NM_001024227 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

ADP-ribosylation factor 1 (ARF1) is a member of the human ARF gene family. The family members encode small guanine nucleotide-binding proteins that stimulate the ADP-ribosyltransferase activity of cholera toxin and play a role in vesicular trafficking as activators of phospholipase D. The gene products, including 6 ARF proteins and 11 ARF-like proteins, constitute a family of the RAS superfamily. The ARF proteins are categorized as class I (ARF1, ARF2 and ARF3), class II (ARF4 and ARF5) and class III (ARF6), and members of each class share a common gene organization. The ARF1 protein is localized to the Golgi apparatus and has a central role in intra-Golgi transport. Gene is highly but stably expressed in human. It shows insignificant upregulation upon bat MARV expression, and equally insignificant downregulation in bat EBOV data.

Show legend

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome753 903 893 877 1155 1043 1107 1167 871
Read_Max
batR. aegyptiacusTranscriptome 1929 2192 1392 1803 1564 1663 1408 2011 2077
Read_Max
bat_genomeR. aegyptiacusGenome 2065 1583 1103 2035 1180 882 1074 2184 2080
DESeq
humanH. sapiensGenome 7711.35 7834.64 6713.49 8247.0 6950.1 7075.4 8007.25 7646.79 8148.49
DESeq
batR. aegyptiacusTranscriptome 5973.56 6689.77 6004.85 6081.04 5936.39 6019.12 5955.71 5997.62 6212.31
DESeq
bat_genomeR. aegyptiacusGenome 11826.07 10896.55 10445.91 13050.58 11450.42 11239.58 11953.78 10556.49 11651.06

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 7711.35 8247.0 8007.25 0.1 0.05 -0.04
7h 7834.64 6950.1 7646.79 -0.17 -0.04 0.14
23h 6713.49 7075.4 8148.49 0.08 0.28 0.2

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 7711.35 7834.64 6713.49 0.02 -0.2 -0.22
Ebov 8247.0 6950.1 7075.4 -0.25 -0.22 0.03
Marv 8007.25 7646.79 8148.49 -0.07 0.03 0.09

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 5973.56 6081.04 5955.71 0.03 -0.0 -0.03
7h 6689.77 5936.39 5997.62 -0.17 -0.16 0.01
23h 6004.85 6019.12 6212.31 0.0 0.05 0.05

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 5973.56 6689.77 6004.85 0.16 0.01 -0.16
Ebov 6081.04 5936.39 6019.12 -0.03 -0.01 0.02
Marv 5955.71 5997.62 6212.31 0.01 0.06 0.05