CLIP1
| Name | Synonyms | Full Name | RefSeq ID | Description (.pdf) | IGV-img (humangenome) | Sashimi-img (humangenome) | UCSC-img (humangenome) | IGV-img (batgenome) |
|---|---|---|---|---|---|---|---|---|
| CLIP1 | CLIP, CLIP-170, CLIP170, CYLN1, RSN,CYLN1, CLIP | CAP-GLY domain containing linker protein 1 | NM_002956 |  |
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Download all snapshots for IGV, UCSC and Sashimi (zip archive)
Description
The protein encoded by this gene links endocytic vesicles to microtubules. This gene is highly expressed in Reed-Sternberg cells of Hodgkin disease. Several transcript variants encoding different isoforms have been found for this gene. Gene is uniformely expressed in human EBOV and MARV, downregulated in human wt 23h. Bat homolog is also downregulated in bat wt 23h, upregulated in EBOV 23h and MARV 7h and 23h.
Maximum read counts and DESeq normalized read counts for human and bat cell lines
| Source | Species | Mapping on | Mock3h | Mock7h | Mock23h | EBOV3h | EBOV7h | EBOV23h | MARV3h | MARV7h | MARV23h | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Read_Max |  | H. sapiens | Genome | 294 | 232 | 282 | 290 | 492 | 442 | 357 | 375 | 333 |
Read_Max |  | R. aegyptiacus | Transcriptome | 128 | 88 | 92 | 126 | 100 | 235 | 106 | 160 | 174 |
Read_Max |  | R. aegyptiacus | Genome | 243 | 202 | 122 | 176 | 161 | 222 | 146 | 293 | 327 |
DESeq | | H. sapiens | Genome | 6784.85 | 5901.98 | 4858.89 | 7700.61 | 6768.81 | 7559.66 | 7440.57 | 5898.61 | 6967.63 |
DESeq | | R. aegyptiacus | Transcriptome | 1590.55 | 1486.89 | 1643.97 | 1825.93 | 2019.25 | 2876.61 | 1548.36 | 1798.83 | 1836.14 |
DESeq | | R. aegyptiacus | Genome | 5026.57 | 5928.8 | 5038.85 | 5013.45 | 6436.74 | 9770.99 | 5433.74 | 5809.92 | 5618.33 |