PPM1D

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
PPM1D PP2C-DELTA, WIP1, WIP,Wip1, PP2C-DELTA protein phosphatase, Mg2+/Mn2+ dependent, 1D NM_003620 pdf

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Description

The protein encoded by this gene is a member of the PP2C family of Ser/Thr protein phosphatases. PP2C family members are known to be negative regulators of cell stress response pathways. The expression of this gene is induced in a p53-dependent manner in response to various environmental stresses. While being induced by tumor suppressor protein TP53/p53, this phosphatase negatively regulates the activity of p38 MAP kinase, MAPK/p38, through which it reduces the phosphorylation of p53, and in turn suppresses p53-mediated transcription and apoptosis. This phosphatase thus mediates a feedback regulation of p38-p53 signaling that contributes to growth inhibition and the suppression of stress induced apoptosis. This gene is located in a chromosomal region known to be amplified in breast cancer. The amplification of this gene has been detected in both breast cancer cell line and primary breast tumors, which suggests a role of this gene in cancer development. The gene is uniormely expressed in human. The bat homolog shows downregulation in early EBOV infection (7h).

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome109 89 64 94 89 132 87 79 54
Read_Max
batR. aegyptiacusTranscriptome 96 65 42 62 35 40 49 58 64
Read_Max
bat_genomeR. aegyptiacusGenome 101 46 29 65 26 25 45 68 62
DESeq
humanH. sapiensGenome 940.69 840.36 682.08 871.34 673.31 1274.81 896.63 696.43 657.76
DESeq
batR. aegyptiacusTranscriptome 696.64 537.44 454.19 472.57 398.52 438.56 563.88 429.8 353.51
DESeq
bat_genomeR. aegyptiacusGenome 782.9 467.29 469.74 638.9 435.29 535.22 635.36 476.56 363.88

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 940.69 871.34 896.63 -0.11 -0.07 0.04
7h 840.36 673.31 696.43 -0.32 -0.27 0.05
23h 682.08 1274.81 657.76 0.9 -0.05 -0.95

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 940.69 840.36 682.08 -0.16 -0.46 -0.3
Ebov 871.34 673.31 1274.81 -0.37 0.55 0.92
Marv 896.63 696.43 657.76 -0.36 -0.45 -0.08

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 696.64 472.57 563.88 -0.56 -0.31 0.25
7h 537.44 398.52 429.8 -0.43 -0.32 0.11
23h 454.19 438.56 353.51 -0.05 -0.36 -0.31

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 696.64 537.44 454.19 -0.37 -0.62 -0.24
Ebov 472.57 398.52 438.56 -0.25 -0.11 0.14
Marv 563.88 429.8 353.51 -0.39 -0.67 -0.28