PPM1D
| Name | Synonyms | Full Name | RefSeq ID | Description (.pdf) | IGV-img (humangenome) | Sashimi-img (humangenome) | UCSC-img (humangenome) | IGV-img (batgenome) |
|---|---|---|---|---|---|---|---|---|
| PPM1D | PP2C-DELTA, WIP1, WIP,Wip1, PP2C-DELTA | protein phosphatase, Mg2+/Mn2+ dependent, 1D | NM_003620 | ![]() |
Download all snapshots for IGV, UCSC and Sashimi (zip archive)
Description
The protein encoded by this gene is a member of the PP2C family of Ser/Thr protein phosphatases. PP2C family members are known to be negative regulators of cell stress response pathways. The expression of this gene is induced in a p53-dependent manner in response to various environmental stresses. While being induced by tumor suppressor protein TP53/p53, this phosphatase negatively regulates the activity of p38 MAP kinase, MAPK/p38, through which it reduces the phosphorylation of p53, and in turn suppresses p53-mediated transcription and apoptosis. This phosphatase thus mediates a feedback regulation of p38-p53 signaling that contributes to growth inhibition and the suppression of stress induced apoptosis. This gene is located in a chromosomal region known to be amplified in breast cancer. The amplification of this gene has been detected in both breast cancer cell line and primary breast tumors, which suggests a role of this gene in cancer development. The gene is uniormely expressed in human. The bat homolog shows downregulation in early EBOV infection (7h).
Maximum read counts and DESeq normalized read counts for human and bat cell lines
| Source | Species | Mapping on | Mock3h | Mock7h | Mock23h | EBOV3h | EBOV7h | EBOV23h | MARV3h | MARV7h | MARV23h | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Read_Max | H. sapiens | Genome | 109 | 89 | 64 | 94 | 89 | 132 | 87 | 79 | 54 | |
Read_Max | R. aegyptiacus | Transcriptome | 96 | 65 | 42 | 62 | 35 | 40 | 49 | 58 | 64 | |
Read_Max | R. aegyptiacus | Genome | 101 | 46 | 29 | 65 | 26 | 25 | 45 | 68 | 62 | |
DESeq | H. sapiens | Genome | 940.69 | 840.36 | 682.08 | 871.34 | 673.31 | 1274.81 | 896.63 | 696.43 | 657.76 | |
DESeq | R. aegyptiacus | Transcriptome | 696.64 | 537.44 | 454.19 | 472.57 | 398.52 | 438.56 | 563.88 | 429.8 | 353.51 | |
DESeq | R. aegyptiacus | Genome | 782.9 | 467.29 | 469.74 | 638.9 | 435.29 | 535.22 | 635.36 | 476.56 | 363.88 |
