VASP

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
VASP vasodilator-stimulated phosphoprotein pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

The vasodilator-stimulated phosphoprotein is involved in the Rap1 and cGMP-PKG signaling pathway, focal adhesion, platelet activation, Fc gamma R-mediated phagocytosis and Leukocyte transendothelial migration. It did not presented a special differentially expressed pattern in the analyzed samples.

Show legend

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome296 283 249 214 228 569 274 359 386
Read_Max
batR. aegyptiacusTranscriptome 375 277 217 240 226 498 299 287 457
Read_Max
bat_genomeR. aegyptiacusGenome 440 256 210 294 207 324 260 341 541
DESeq
humanH. sapiensGenome 3334.57 2801.57 2709.43 2723.81 2043.13 5017.3 2541.39 2970.59 3754.52
DESeq
batR. aegyptiacusTranscriptome 2221.49 2057.83 2198.54 1673.93 1881.27 3623.42 2147.94 1716.21 2989.88
DESeq
bat_genomeR. aegyptiacusGenome 3364.51 2685.12 3089.59 3270.55 3066.02 5856.07 3446.69 2651.61 4472.75

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 3334.57 2723.81 2541.39 -0.29 -0.39 -0.1
7h 2801.57 2043.13 2970.59 -0.46 0.08 0.54
23h 2709.43 5017.3 3754.52 0.89 0.47 -0.42

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 3334.57 2801.57 2709.43 -0.25 -0.3 -0.05
Ebov 2723.81 2043.13 5017.3 -0.41 0.88 1.3
Marv 2541.39 2970.59 3754.52 0.23 0.56 0.34

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 2221.49 1673.93 2147.94 -0.41 -0.05 0.36
7h 2057.83 1881.27 1716.21 -0.13 -0.26 -0.13
23h 2198.54 3623.42 2989.88 0.72 0.44 -0.28

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 2221.49 2057.83 2198.54 -0.11 -0.01 0.1
Ebov 1673.93 1881.27 3623.42 0.17 1.11 0.95
Marv 2147.94 1716.21 2989.88 -0.32 0.48 0.8