RAB11FIP5

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
RAB11FIP5 GAF1, RIP11, pp75, KIAA0857 RAB11 family interacting protein 5 (class I) NM_015470 pdf

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Description

Homo sapiens RAB11 family interacting protein 5 (class I) (RAB11FIP5), mRNA. The gene is 3 fold upregulated in human EBOV 23h but constant otherwise. The bat homolog is uniformly expressed.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome38 43 43 48 52 187 64 63 51
Read_Max
batR. aegyptiacusTranscriptome 75 89 67 80 76 128 68 83 136
Read_Max
bat_genomeR. aegyptiacusGenome 111 103 47 87 85 83 84 124 142
DESeq
humanH. sapiensGenome 1072.61 1205.47 1322.45 1321.91 1142.38 4179.05 1397.51 1398.26 1726.62
DESeq
batR. aegyptiacusTranscriptome 1228.45 1252.7 1072.29 1263.71 1297.59 2032.28 1262.47 1144.47 1713.68
DESeq
bat_genomeR. aegyptiacusGenome 1790.97 1882.87 1525.27 1886.09 2154.14 3144.73 2014.04 1933.2 2556.59

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1072.61 1321.91 1397.51 0.3 0.38 0.08
7h 1205.47 1142.38 1398.26 -0.08 0.21 0.29
23h 1322.45 4179.05 1726.62 1.66 0.38 -1.28

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1072.61 1205.47 1322.45 0.17 0.3 0.13
Ebov 1321.91 1142.38 4179.05 -0.21 1.66 1.87
Marv 1397.51 1398.26 1726.62 0.0 0.31 0.3

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1228.45 1263.71 1262.47 0.04 0.04 -0.0
7h 1252.7 1297.59 1144.47 0.05 -0.13 -0.18
23h 1072.29 2032.28 1713.68 0.92 0.68 -0.25

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1228.45 1252.7 1072.29 0.03 -0.2 -0.22
Ebov 1263.71 1297.59 2032.28 0.04 0.69 0.65
Marv 1262.47 1144.47 1713.68 -0.14 0.44 0.58