RAB11FIP5

Name	Synonyms	Full Name	RefSeq ID	Description (.pdf)	IGV-img (human_genome)	Sashimi-img (human_genome)	UCSC-img (human_genome)	IGV-img (bat_genome)
RAB11FIP5	GAF1, RIP11, pp75, KIAA0857	RAB11 family interacting protein 5 (class I)	NM_015470	pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Homo sapiens RAB11 family interacting protein 5 (class I) (RAB11FIP5), mRNA. The gene is 3 fold upregulated in human EBOV 23h but constant otherwise. The bat homolog is uniformly expressed.

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source		Species	Mapping on	Mock_3h	Mock_7h	Mock_23h	EBOV_3h	EBOV_7h	EBOV_23h	MARV_3h	MARV_7h	MARV_23h
Read_Max		H. sapiens	Genome	38	43	43	48	52	187	64	63	51
Read_Max		R. aegyptiacus	Transcriptome	75	89	67	80	76	128	68	83	136
Read_Max		R. aegyptiacus	Genome	111	103	47	87	85	83	84	124	142
DESeq		H. sapiens	Genome	1072.61	1205.47	1322.45	1321.91	1142.38	4179.05	1397.51	1398.26	1726.62
DESeq		R. aegyptiacus	Transcriptome	1228.45	1252.7	1072.29	1263.71	1297.59	2032.28	1262.47	1144.47	1713.68
DESeq		R. aegyptiacus	Genome	1790.97	1882.87	1525.27	1886.09	2154.14	3144.73	2014.04	1933.2	2556.59

Human Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	1072.61	1321.91	1397.51	0.3	0.38	0.08
7h	1205.47	1142.38	1398.26	-0.08	0.21	0.29
23h	1322.45	4179.05	1726.62	1.66	0.38	-1.28

Human Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	1072.61	1205.47	1322.45	0.17	0.3	0.13
Ebov	1321.91	1142.38	4179.05	-0.21	1.66	1.87
Marv	1397.51	1398.26	1726.62	0.0	0.31	0.3

Bat Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	1228.45	1263.71	1262.47	0.04	0.04	-0.0
7h	1252.7	1297.59	1144.47	0.05	-0.13	-0.18
23h	1072.29	2032.28	1713.68	0.92	0.68	-0.25

Bat Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	1228.45	1252.7	1072.29	0.03	-0.2	-0.22
Ebov	1263.71	1297.59	2032.28	0.04	0.69	0.65
Marv	1262.47	1144.47	1713.68	-0.14	0.44	0.58