RPGRIP1L

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
RPGRIP1L FTM, JBTS7, MKS5, CORS3,KIAA1005, NPHP8, FTM, PPP1R134 RPGRIP1-like NM_015272 pdf NONE

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

The gene RPGRIP1L is weakly expressed in human and bat datasets without significant changes in expression levels. The protein encoded by this gene can localize to the basal body-centrosome complex or to primary cilia and centrosomes in ciliated cells. The encoded protein has been found to interact with nephrocystin-4. Defects in this gene are a cause of Joubert syndrome type 7 (JBTS7) and Meckel syndrome type 5 (MKS5). Two transcript variants encoding different isoforms have been found for this gene. (provided by RefSeq, Jul 2008)

Show legend

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome24 37 31 26 48 41 37 60 29
Read_Max
batR. aegyptiacusTranscriptome 83 69 82 96 93 84 60 127 106
Read_Max
bat_genomeR. aegyptiacusGenome 97 100 77 62 77 51 52 143 117
DESeq
humanH. sapiensGenome 325.73 492.58 432.88 363.74 542.43 203.65 343.99 542.16 484.87
DESeq
batR. aegyptiacusTranscriptome 929.36 799.77 1140.69 1179.47 1146.46 917.19 837.53 1206.44 963.18
DESeq
bat_genomeR. aegyptiacusGenome 1088.85 1305.14 1260.83 957.86 1305.88 1001.25 964.85 1311.53 1072.81

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 325.73 363.74 343.99 0.16 0.08 -0.08
7h 492.58 542.43 542.16 0.14 0.14 -0.0
23h 432.88 203.65 484.87 -1.09 0.16 1.25

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 325.73 492.58 432.88 0.6 0.41 -0.19
Ebov 363.74 542.43 203.65 0.58 -0.84 -1.41
Marv 343.99 542.16 484.87 0.66 0.5 -0.16

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 929.36 1179.47 837.53 0.34 -0.15 -0.49
7h 799.77 1146.46 1206.44 0.52 0.59 0.07
23h 1140.69 917.19 963.18 -0.31 -0.24 0.07

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 929.36 799.77 1140.69 -0.22 0.3 0.51
Ebov 1179.47 1146.46 917.19 -0.04 -0.36 -0.32
Marv 837.53 1206.44 963.18 0.53 0.2 -0.32