RPGRIP1L
| Name | Synonyms | Full Name | RefSeq ID | Description (.pdf) | IGV-img (humangenome) | Sashimi-img (humangenome) | UCSC-img (humangenome) | IGV-img (batgenome) |
|---|---|---|---|---|---|---|---|---|
| RPGRIP1L | FTM, JBTS7, MKS5, CORS3,KIAA1005, NPHP8, FTM, PPP1R134 | RPGRIP1-like | NM_015272 |  |
NONE |  |
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Download all snapshots for IGV, UCSC and Sashimi (zip archive)
Description
The gene RPGRIP1L is weakly expressed in human and bat datasets without significant changes in expression levels. The protein encoded by this gene can localize to the basal body-centrosome complex or to primary cilia and centrosomes in ciliated cells. The encoded protein has been found to interact with nephrocystin-4. Defects in this gene are a cause of Joubert syndrome type 7 (JBTS7) and Meckel syndrome type 5 (MKS5). Two transcript variants encoding different isoforms have been found for this gene. (provided by RefSeq, Jul 2008)
Maximum read counts and DESeq normalized read counts for human and bat cell lines
| Source | Species | Mapping on | Mock3h | Mock7h | Mock23h | EBOV3h | EBOV7h | EBOV23h | MARV3h | MARV7h | MARV23h | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Read_Max |  | H. sapiens | Genome | 24 | 37 | 31 | 26 | 48 | 41 | 37 | 60 | 29 |
Read_Max |  | R. aegyptiacus | Transcriptome | 83 | 69 | 82 | 96 | 93 | 84 | 60 | 127 | 106 |
Read_Max |  | R. aegyptiacus | Genome | 97 | 100 | 77 | 62 | 77 | 51 | 52 | 143 | 117 |
DESeq | | H. sapiens | Genome | 325.73 | 492.58 | 432.88 | 363.74 | 542.43 | 203.65 | 343.99 | 542.16 | 484.87 |
DESeq | | R. aegyptiacus | Transcriptome | 929.36 | 799.77 | 1140.69 | 1179.47 | 1146.46 | 917.19 | 837.53 | 1206.44 | 963.18 |
DESeq | | R. aegyptiacus | Genome | 1088.85 | 1305.14 | 1260.83 | 957.86 | 1305.88 | 1001.25 | 964.85 | 1311.53 | 1072.81 |