EEA1

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
EEA1 MST105, MSTP105, ZFYVE2,ZFYVE2 early endosome antigen 1 NM_003566 pdf NONE

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Homo sapiens early endosome antigen 1 (EEA1), mRNA. The gene is uniformly expressed in human, but contains a part of a pseudogene. The bat homolog is also highly but uniformly expressed.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome924 944 795 1067 1369 673 1013 1550 665
Read_Max
batR. aegyptiacusTranscriptome 412 278 198 291 280 339 350 337 250
Read_Max
bat_genomeR. aegyptiacusGenome 469 308 176 275 245 211 308 419 279
DESeq
humanH. sapiensGenome 11154.52 9647.98 9502.33 10023.04 10950.63 13379.98 9352.88 8570.84 11955.29
DESeq
batR. aegyptiacusTranscriptome 7119.51 5651.37 4611.08 7008.61 7055.57 7288.19 8469.75 7097.3 5102.3
DESeq
bat_genomeR. aegyptiacusGenome 8776.95 8512.61 5612.36 7399.21 9025.06 9246.22 10532.37 8475.8 6608.94

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 11154.52 10023.04 9352.88 -0.15 -0.25 -0.1
7h 9647.98 10950.63 8570.84 0.18 -0.17 -0.35
23h 9502.33 13379.98 11955.29 0.49 0.33 -0.16

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 11154.52 9647.98 9502.33 -0.21 -0.23 -0.02
Ebov 10023.04 10950.63 13379.98 0.13 0.42 0.29
Marv 9352.88 8570.84 11955.29 -0.13 0.35 0.48

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 7119.51 7008.61 8469.75 -0.02 0.25 0.27
7h 5651.37 7055.57 7097.3 0.32 0.33 0.01
23h 4611.08 7288.19 5102.3 0.66 0.15 -0.51

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 7119.51 5651.37 4611.08 -0.33 -0.63 -0.29
Ebov 7008.61 7055.57 7288.19 0.01 0.06 0.05
Marv 8469.75 7097.3 5102.3 -0.26 -0.73 -0.48