SMAD2

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
SMAD2 JV18, JV18-1, MADH2, MADR2, hMAD-2, hSMAD2,MADR2 SMAD family member 2 NM_005901 pdf

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Description

The protein encoded by this gene belongs to the SMAD, a family of proteins similar to the gene products of the Drosophila gene 'mothers against decapentaplegic' (Mad) and the C. elegans gene Sma. SMAD proteins are signal transducers and transcriptional modulators that mediate multiple signaling pathways. This protein mediates the signal of the transforming growth factor (TGF)-beta, and thus regulates multiple cellular processes, such as cell proliferation, apoptosis, and differentiation. This protein is recruited to the TGF-beta receptors through its interaction with the SMAD anchor for receptor activation (SARA) protein. In response to TGF-beta signal, this protein is phosphorylated by the TGF-beta receptors. The phosphorylation induces the dissociation of this protein with SARA and the association with the family member SMAD4. The association with SMAD4 is important for the translocation of this protein into the nucleus, where it binds to target promoters and forms a transcription repressor complex with other cofactors. This protein can also be phosphorylated by activin type 1 receptor kinase, and mediates the signal from the activin. The gene is upregulated in human EBOV and early MARV data. The homolog is upregulated in MARV.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome194 164 190 148 253 255 160 236 145
Read_Max
batR. aegyptiacusTranscriptome 203 138 113 178 166 211 116 203 198
Read_Max
bat_genomeR. aegyptiacusGenome 240 221 102 144 146 132 116 271 215
DESeq
humanH. sapiensGenome 2747.01 2015.25 2202.09 2326.85 2022.81 2242.02 2082.61 1895.46 2166.99
DESeq
batR. aegyptiacusTranscriptome 1417.48 1118.37 1154.13 1446.84 1390.67 1615.24 1381.5 1346.07 1372.54
DESeq
bat_genomeR. aegyptiacusGenome 4054.6 3707.33 2593.07 2826.18 3495.73 3998.47 3798.67 3371.61 3178.18

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 2747.01 2326.85 2082.61 -0.24 -0.4 -0.16
7h 2015.25 2022.81 1895.46 0.01 -0.09 -0.09
23h 2202.09 2242.02 2166.99 0.03 -0.02 -0.05

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 2747.01 2015.25 2202.09 -0.45 -0.32 0.13
Ebov 2326.85 2022.81 2242.02 -0.2 -0.05 0.15
Marv 2082.61 1895.46 2166.99 -0.14 0.06 0.19

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1417.48 1446.84 1381.5 0.03 -0.04 -0.07
7h 1118.37 1390.67 1346.07 0.31 0.27 -0.05
23h 1154.13 1615.24 1372.54 0.48 0.25 -0.23

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1417.48 1118.37 1154.13 -0.34 -0.3 0.05
Ebov 1446.84 1390.67 1615.24 -0.06 0.16 0.22
Marv 1381.5 1346.07 1372.54 -0.04 -0.01 0.03