VTA1

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
VTA1 C6orf55, HSPC228, My012,HSPC228 vesicle (multivesicular body) trafficking 1 NM_016485 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

VTA1 encodes for a protein that is involved in trafficking of the multivesicular body, an endosomal compartment involved in sorting membrane proteins for degradation in lysosomes. It is slightly downregulated in human after 23 hours of marburg virus infection. In bat it is constantly expressed.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome353 351 246 322 438 338 417 525 252
Read_Max
batR. aegyptiacusTranscriptome 301 332 174 243 225 233 239 272 225
Read_Max
bat_genomeR. aegyptiacusGenome 335 254 151 320 192 142 205 329 251
DESeq
humanH. sapiensGenome 2866.76 2534.36 2715.38 2759.17 2821.13 2609.16 2789.63 2561.32 2686.75
DESeq
batR. aegyptiacusTranscriptome 1179.72 1338.03 1106.49 1187.71 1220.93 1154.58 1373.71 1220.48 1032.28
DESeq
bat_genomeR. aegyptiacusGenome 1418.85 1324.31 1172.68 1490.11 1512.36 1422.9 1756.52 1325.01 1345.08

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 2866.76 2759.17 2789.63 -0.06 -0.04 0.02
7h 2534.36 2821.13 2561.32 0.15 0.02 -0.14
23h 2715.38 2609.16 2686.75 -0.06 -0.02 0.04

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 2866.76 2534.36 2715.38 -0.18 -0.08 0.1
Ebov 2759.17 2821.13 2609.16 0.03 -0.08 -0.11
Marv 2789.63 2561.32 2686.75 -0.12 -0.05 0.07

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1179.72 1187.71 1373.71 0.01 0.22 0.21
7h 1338.03 1220.93 1220.48 -0.13 -0.13 -0.0
23h 1106.49 1154.58 1032.28 0.06 -0.1 -0.16

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1179.72 1338.03 1106.49 0.18 -0.09 -0.27
Ebov 1187.71 1220.93 1154.58 0.04 -0.04 -0.08
Marv 1373.71 1220.48 1032.28 -0.17 -0.41 -0.24