VTA1
| Name | Synonyms | Full Name | RefSeq ID | Description (.pdf) | IGV-img (humangenome) | Sashimi-img (humangenome) | UCSC-img (humangenome) | IGV-img (batgenome) |
|---|---|---|---|---|---|---|---|---|
| VTA1 | C6orf55, HSPC228, My012,HSPC228 | vesicle (multivesicular body) trafficking 1 | NM_016485 |  |
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Download all snapshots for IGV, UCSC and Sashimi (zip archive)
Description
VTA1 encodes for a protein that is involved in trafficking of the multivesicular body, an endosomal compartment involved in sorting membrane proteins for degradation in lysosomes. It is slightly downregulated in human after 23 hours of marburg virus infection. In bat it is constantly expressed.
Maximum read counts and DESeq normalized read counts for human and bat cell lines
| Source | Species | Mapping on | Mock3h | Mock7h | Mock23h | EBOV3h | EBOV7h | EBOV23h | MARV3h | MARV7h | MARV23h | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Read_Max |  | H. sapiens | Genome | 353 | 351 | 246 | 322 | 438 | 338 | 417 | 525 | 252 |
Read_Max |  | R. aegyptiacus | Transcriptome | 301 | 332 | 174 | 243 | 225 | 233 | 239 | 272 | 225 |
Read_Max |  | R. aegyptiacus | Genome | 335 | 254 | 151 | 320 | 192 | 142 | 205 | 329 | 251 |
DESeq | | H. sapiens | Genome | 2866.76 | 2534.36 | 2715.38 | 2759.17 | 2821.13 | 2609.16 | 2789.63 | 2561.32 | 2686.75 |
DESeq | | R. aegyptiacus | Transcriptome | 1179.72 | 1338.03 | 1106.49 | 1187.71 | 1220.93 | 1154.58 | 1373.71 | 1220.48 | 1032.28 |
DESeq | | R. aegyptiacus | Genome | 1418.85 | 1324.31 | 1172.68 | 1490.11 | 1512.36 | 1422.9 | 1756.52 | 1325.01 | 1345.08 |