PML

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
PML TRIM19, PP8675, RNF71, MYL,MYL, TRIM19 promyelocytic leukemia NM_002675 pdf NONE

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Description

The gene PML is weakly expressed in human and bat datasets. The protein encoded by this gene is a member of the tripartite motif (TRIM) family. The TRIM motif includes three zinc-binding domains, a RING, a B-box type 1 and a B-box type 2, and a coiled-coil region. This phosphoprotein localizes to nuclear bodies where it functions as a transcription factor and tumor suppressor. Its expression is cell-cycle related and it regulates the p53 response to oncogenic signals. The gene is often involved in the translocation with the retinoic acid receptor alpha gene associated with acute promyelocytic leukemia (APL). Extensive alternative splicing of this gene results in several variations of the protein's central and C-terminal regions; all variants encode the same N-terminus. Alternatively spliced transcript variants encoding different isoforms have been identified. (provided by RefSeq, Jul 2008)

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome15 18 12 14 20 23 26 27 14
Read_Max
batR. aegyptiacusTranscriptome 48 60 48 60 52 42 23 70 70
Read_Max
bat_genomeR. aegyptiacusGenome 64 77 51 68 51 33 28 102 104
DESeq
humanH. sapiensGenome 214.11 289.62 240.27 239.4 213.99 185.23 253.63 298.36 224.99
DESeq
batR. aegyptiacusTranscriptome 421.91 460.29 540.92 487.22 493.79 347.46 266.87 529.77 493.46
DESeq
bat_genomeR. aegyptiacusGenome 949.63 1140.86 1292.07 1129.68 1120.6 882.46 687.09 1201.31 1195.24

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 214.11 239.4 253.63 0.16 0.24 0.08
7h 289.62 213.99 298.36 -0.44 0.04 0.48
23h 240.27 185.23 224.99 -0.38 -0.09 0.28

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 214.11 289.62 240.27 0.44 0.17 -0.27
Ebov 239.4 213.99 185.23 -0.16 -0.37 -0.21
Marv 253.63 298.36 224.99 0.23 -0.17 -0.41

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 421.91 487.22 266.87 0.21 -0.66 -0.87
7h 460.29 493.79 529.77 0.1 0.2 0.1
23h 540.92 347.46 493.46 -0.64 -0.13 0.51

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 421.91 460.29 540.92 0.13 0.36 0.23
Ebov 487.22 493.79 347.46 0.02 -0.49 -0.51
Marv 266.87 529.77 493.46 0.99 0.89 -0.1