NUP54

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
NUP54 B2RCK7, NM_017426, NP_059122, NUP54_HUMAN, Q7Z3B4, Q96EA7, Q9NVL5, Q9P0I1 nucleoporin 54kDa pdf

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Description

The nuclear envelope creates distinct nuclear and cytoplasmic compartments in eukaryotic cells. It consists of two concentric membranes perforated by nuclear pores, large protein complexes that form aqueous channels to regulate the flow of macromolecules between the nucleus and the cytoplasm. These complexes are composed of at least 100 different polypeptide subunits, many of which belong to the nucleoporin family. This gene encodes a member of the phe-gly (FG) repeat-containing nucleoporin subset. This gene is not differentially expressed.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome235 226 204 233 266 335 301 310 181
Read_Max
batR. aegyptiacusTranscriptome 120 128 66 102 70 91 108 97 71
Read_Max
bat_genomeR. aegyptiacusGenome 140 105 64 123 62 54 95 141 112
DESeq
humanH. sapiensGenome 2046.81 1871.45 2003.53 2167.16 2008.99 2331.5 2008.04 1868.28 1854.93
DESeq
batR. aegyptiacusTranscriptome 626.06 678.14 561.69 575.12 548.54 602.81 682.9 638.83 501.33
DESeq
bat_genomeR. aegyptiacusGenome 1133.54 1014.91 898.2 1209.67 1031.31 1080.88 1167.26 1152.15 920.41

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 2046.81 2167.16 2008.04 0.08 -0.03 -0.11
7h 1871.45 2008.99 1868.28 0.1 -0.0 -0.1
23h 2003.53 2331.5 1854.93 0.22 -0.11 -0.33

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 2046.81 1871.45 2003.53 -0.13 -0.03 0.1
Ebov 2167.16 2008.99 2331.5 -0.11 0.11 0.21
Marv 2008.04 1868.28 1854.93 -0.1 -0.11 -0.01

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 626.06 575.12 682.9 -0.12 0.13 0.25
7h 678.14 548.54 638.83 -0.31 -0.09 0.22
23h 561.69 602.81 501.33 0.1 -0.16 -0.27

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 626.06 678.14 561.69 0.12 -0.16 -0.27
Ebov 575.12 548.54 602.81 -0.07 0.07 0.14
Marv 682.9 638.83 501.33 -0.1 -0.45 -0.35