NUP54
| Name | Synonyms | Full Name | RefSeq ID | Description (.pdf) | IGV-img (humangenome) | Sashimi-img (humangenome) | UCSC-img (humangenome) | IGV-img (batgenome) |
|---|---|---|---|---|---|---|---|---|
| NUP54 | B2RCK7, NM_017426, NP_059122, NUP54_HUMAN, Q7Z3B4, Q96EA7, Q9NVL5, Q9P0I1 | nucleoporin 54kDa |  |
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Download all snapshots for IGV, UCSC and Sashimi (zip archive)
Description
The nuclear envelope creates distinct nuclear and cytoplasmic compartments in eukaryotic cells. It consists of two concentric membranes perforated by nuclear pores, large protein complexes that form aqueous channels to regulate the flow of macromolecules between the nucleus and the cytoplasm. These complexes are composed of at least 100 different polypeptide subunits, many of which belong to the nucleoporin family. This gene encodes a member of the phe-gly (FG) repeat-containing nucleoporin subset. This gene is not differentially expressed.
Maximum read counts and DESeq normalized read counts for human and bat cell lines
| Source | Species | Mapping on | Mock3h | Mock7h | Mock23h | EBOV3h | EBOV7h | EBOV23h | MARV3h | MARV7h | MARV23h | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Read_Max |  | H. sapiens | Genome | 235 | 226 | 204 | 233 | 266 | 335 | 301 | 310 | 181 |
Read_Max |  | R. aegyptiacus | Transcriptome | 120 | 128 | 66 | 102 | 70 | 91 | 108 | 97 | 71 |
Read_Max |  | R. aegyptiacus | Genome | 140 | 105 | 64 | 123 | 62 | 54 | 95 | 141 | 112 |
DESeq | | H. sapiens | Genome | 2046.81 | 1871.45 | 2003.53 | 2167.16 | 2008.99 | 2331.5 | 2008.04 | 1868.28 | 1854.93 |
DESeq | | R. aegyptiacus | Transcriptome | 626.06 | 678.14 | 561.69 | 575.12 | 548.54 | 602.81 | 682.9 | 638.83 | 501.33 |
DESeq | | R. aegyptiacus | Genome | 1133.54 | 1014.91 | 898.2 | 1209.67 | 1031.31 | 1080.88 | 1167.26 | 1152.15 | 920.41 |