NUP98

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
NUP98 ADIR2, NUP196, NUP96,NUP96 nucleoporin 98kDa NM_016320 pdf

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Description

The nucleoporin 98kDa is involved in RNA transport and in Influenza A. It does not present any particular differential expression pattern in the samples analyzed.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome405 448 347 385 447 795 516 471 288
Read_Max
batR. aegyptiacusTranscriptome 350 235 218 234 223 267 199 284 255
Read_Max
bat_genomeR. aegyptiacusGenome 370 294 182 243 192 157 172 335 286
DESeq
humanH. sapiensGenome 8786.01 8877.97 7774.82 8896.05 8648.36 16011.83 8880.94 8921.75 7794.02
DESeq
batR. aegyptiacusTranscriptome 6223.92 5104.03 4817.52 5779.78 5573.91 6524.7 5082.47 5423.41 4940.48
DESeq
bat_genomeR. aegyptiacusGenome 7707.87 6908.11 5659.22 6779.07 6860.87 8412.06 6507.67 6463.3 6033.58

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 8786.01 8896.05 8880.94 0.02 0.02 -0.0
7h 8877.97 8648.36 8921.75 -0.04 0.01 0.04
23h 7774.82 16011.83 7794.02 1.04 0.0 -1.04

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 8786.01 8877.97 7774.82 0.02 -0.18 -0.19
Ebov 8896.05 8648.36 16011.83 -0.04 0.85 0.89
Marv 8880.94 8921.75 7794.02 0.01 -0.19 -0.19

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 6223.92 5779.78 5082.47 -0.11 -0.29 -0.19
7h 5104.03 5573.91 5423.41 0.13 0.09 -0.04
23h 4817.52 6524.7 4940.48 0.44 0.04 -0.4

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 6223.92 5104.03 4817.52 -0.29 -0.37 -0.08
Ebov 5779.78 5573.91 6524.7 -0.05 0.17 0.23
Marv 5082.47 5423.41 4940.48 0.09 -0.04 -0.13