NUPL1

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
NUPL1 PRO2463,KIAA0410 nucleoporin like 1 pdf NONE

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Description

The gene NUPL1 is expressed throughout human and bat datasets without significant changes in expression profiles. This gene encodes a member of the nucleoporin family that shares 87% sequence identity with rat nucleoporin p58. The protein is localized to the nuclear rim and is a component of the nuclear pore complex (NPC). All molecules entering or leaving the nucleus either diffuse through or are actively transported by the NPC. Alternate transcriptional splice variants, encoding different isoforms, have been characterized. (provided by RefSeq, Jul 2008)

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome352 326 386 257 494 551 336 402 299
Read_Max
batR. aegyptiacusTranscriptome 426 411 197 349 296 322 364 372 319
Read_Max
bat_genomeR. aegyptiacusGenome NA NA NA NA NA NA NA NA NA
DESeq
humanH. sapiensGenome 5988.24 5735.75 6267.71 5290.35 6255.84 8282.1 5358.97 5233.55 6108.63
DESeq
batR. aegyptiacusTranscriptome 3224.62 2974.59 1800.32 2650.94 2797.86 2609.71 3439.45 2572.99 2037.32
DESeq
bat_genomeR. aegyptiacusGenome NA NA NA NA NA NA NA NA NA

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 5988.24 5290.35 5358.97 -0.18 -0.16 0.02
7h 5735.75 6255.84 5233.55 0.13 -0.13 -0.26
23h 6267.71 8282.1 6108.63 0.4 -0.04 -0.44

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 5988.24 5735.75 6267.71 -0.06 0.07 0.13
Ebov 5290.35 6255.84 8282.1 0.24 0.65 0.4
Marv 5358.97 5233.55 6108.63 -0.03 0.19 0.22

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 3224.62 2650.94 3439.45 -0.28 0.09 0.38
7h 2974.59 2797.86 2572.99 -0.09 -0.21 -0.12
23h 1800.32 2609.71 2037.32 0.54 0.18 -0.36

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 3224.62 2974.59 1800.32 -0.12 -0.84 -0.72
Ebov 2650.94 2797.86 2609.71 0.08 -0.02 -0.1
Marv 3439.45 2572.99 2037.32 -0.42 -0.76 -0.34