ARPC5
| Name | Synonyms | Full Name | RefSeq ID | Description (.pdf) | IGV-img (humangenome) | Sashimi-img (humangenome) | UCSC-img (humangenome) | IGV-img (batgenome) |
|---|---|---|---|---|---|---|---|---|
| ARPC5 | p16-Arc, ARC16, dJ127C7.3 | actin related protein 2/3 complex, subunit 5, 16kDa | NM_005717 |  |
NONE |  |
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Download all snapshots for IGV, UCSC and Sashimi (zip archive)
Description
The gene ARPC5 is expressed throughout all human and bat datasets. However while expression levels go down in human, they stay stable in bat. This gene encodes one of seven subunits of the human Arp2/3 protein complex. The Arp2/3 protein complex has been implicated in the control of actin polymerization in cells and has been conserved through evolution. The exact role of the protein encoded by this gene, the p16 subunit, has yet to be determined. Alternatively spliced transcript variants encoding different isoforms have been observed for this gene. (provided by RefSeq, Jul 2012)
Maximum read counts and DESeq normalized read counts for human and bat cell lines
| Source | Species | Mapping on | Mock3h | Mock7h | Mock23h | EBOV3h | EBOV7h | EBOV23h | MARV3h | MARV7h | MARV23h | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Read_Max |  | H. sapiens | Genome | 557 | 569 | 393 | 584 | 601 | 336 | 686 | 833 | 521 |
Read_Max |  | R. aegyptiacus | Transcriptome | 316 | 282 | 315 | 322 | 270 | 246 | 322 | 367 | 441 |
Read_Max |  | R. aegyptiacus | Genome | 387 | 382 | 277 | 279 | 268 | 210 | 266 | 509 | 500 |
DESeq | | H. sapiens | Genome | 3522.31 | 3349.24 | 3232.64 | 3558.79 | 3525.14 | 2298.6 | 3563.33 | 3551.71 | 4884.27 |
DESeq | | R. aegyptiacus | Transcriptome | 886.51 | 877.83 | 1050.3 | 903.85 | 981.11 | 851.75 | 1108.96 | 970.14 | 1041.03 |
DESeq | | R. aegyptiacus | Genome | 2662.39 | 3125.03 | 2850.81 | 2585.23 | 3204.42 | 3052.05 | 3454.56 | 3312.93 | 3398.22 |