PRKCB

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
PRKCB protein kinase C, beta NM_212535 pdf NONE NONE NONE

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Description

The gene PRKCB is not expressed in human or bat datasets. Protein kinase C (PKC) is a family of serine- and threonine-specific protein kinases that can be activated by calcium and second messenger diacylglycerol. PKC family members phosphorylate a wide variety of protein targets and are known to be involved in diverse cellular signaling pathways. PKC family members also serve as major receptors for phorbol esters, a class of tumor promoters. Each member of the PKC family has a specific expression profile and is believed to play a distinct role in cells. The protein encoded by this gene is one of the PKC family members. This protein kinase has been reported to be involved in many different cellular functions, such as B cell activation, apoptosis induction, endothelial cell proliferation, and intestinal sugar absorption. Studies in mice also suggest that this kinase may also regulate neuronal functions and correlate fear-induced conflict behavior after stress. Alternatively spliced transcript variants encoding distinct isoforms have been reported. (provided by RefSeq, Jul 2008)

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome38 35 42 32 46 63 39 22 46
Read_Max
batR. aegyptiacusTranscriptome 152 150 106 99 106 128 97 96 132
Read_Max
bat_genomeR. aegyptiacusGenome 0 0 0 0 0 0 0 0 0
DESeq
humanH. sapiensGenome 1.0 1.0 1.0 3.28 1.0 3.63 1.0 1.0 1.0
DESeq
batR. aegyptiacusTranscriptome 328.65 313.25 317.38 250.06 279.15 332.06 311.36 224.08 310.65
DESeq
bat_genomeR. aegyptiacusGenome 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1.0 3.28 1.0 1.71 0.0 -1.71
7h 1.0 1.0 1.0 0.0 0.0 0.0
23h 1.0 3.63 1.0 1.86 0.0 -1.86

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1.0 1.0 1.0 0.0 0.0 0.0
Ebov 3.28 1.0 3.63 -1.71 0.15 1.86
Marv 1.0 1.0 1.0 0.0 0.0 0.0

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 328.65 250.06 311.36 -0.39 -0.08 0.32
7h 313.25 279.15 224.08 -0.17 -0.48 -0.32
23h 317.38 332.06 310.65 0.07 -0.03 -0.1

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 328.65 313.25 317.38 -0.07 -0.05 0.02
Ebov 250.06 279.15 332.06 0.16 0.41 0.25
Marv 311.36 224.08 310.65 -0.47 -0.0 0.47