TRAM1

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
TRAM1 PNAS8, TRAM, TRAMP,TRAM translocation associated membrane protein 1 NM_014294 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

The translocating chain-associated membrane protein 1 gene is involved in the protein processing in endoplasmic reticulum. It seems to be slightly downregulated after 23 hours in the control samples for bats.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome1584 1193 1261 1050 1703 1883 1487 1408 1151
Read_Max
batR. aegyptiacusTranscriptome 918 786 415 786 631 656 831 839 792
Read_Max
bat_genomeR. aegyptiacusGenome 1004 771 340 711 515 372 695 972 844
DESeq
humanH. sapiensGenome 14497.23 11652.03 12680.36 11756.88 12739.94 15998.67 11817.83 9976.89 13304.69
DESeq
batR. aegyptiacusTranscriptome 4688.14 4484.99 3337.02 4272.59 4453.64 4511.38 5566.37 4121.3 3949.44
DESeq
bat_genomeR. aegyptiacusGenome 8479.6 7663.82 5402.6 8025.28 8264.97 8344.18 10591.97 7682.85 7003.65

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 14497.23 11756.88 11817.83 -0.3 -0.29 0.01
7h 11652.03 12739.94 9976.89 0.13 -0.22 -0.35
23h 12680.36 15998.67 13304.69 0.34 0.07 -0.27

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 14497.23 11652.03 12680.36 -0.32 -0.19 0.12
Ebov 11756.88 12739.94 15998.67 0.12 0.44 0.33
Marv 11817.83 9976.89 13304.69 -0.24 0.17 0.42

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 4688.14 4272.59 5566.37 -0.13 0.25 0.38
7h 4484.99 4453.64 4121.3 -0.01 -0.12 -0.11
23h 3337.02 4511.38 3949.44 0.44 0.24 -0.19

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 4688.14 4484.99 3337.02 -0.06 -0.49 -0.43
Ebov 4272.59 4453.64 4511.38 0.06 0.08 0.02
Marv 5566.37 4121.3 3949.44 -0.43 -0.5 -0.06