TRAM1

Name	Synonyms	Full Name	RefSeq ID	Description (.pdf)	IGV-img (human_genome)	Sashimi-img (human_genome)	UCSC-img (human_genome)	IGV-img (bat_genome)
TRAM1	PNAS8, TRAM, TRAMP,TRAM	translocation associated membrane protein 1	NM_014294	pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

The translocating chain-associated membrane protein 1 gene is involved in the protein processing in endoplasmic reticulum. It seems to be slightly downregulated after 23 hours in the control samples for bats.

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source		Species	Mapping on	Mock_3h	Mock_7h	Mock_23h	EBOV_3h	EBOV_7h	EBOV_23h	MARV_3h	MARV_7h	MARV_23h
Read_Max		H. sapiens	Genome	1584	1193	1261	1050	1703	1883	1487	1408	1151
Read_Max		R. aegyptiacus	Transcriptome	918	786	415	786	631	656	831	839	792
Read_Max		R. aegyptiacus	Genome	1004	771	340	711	515	372	695	972	844
DESeq		H. sapiens	Genome	14497.23	11652.03	12680.36	11756.88	12739.94	15998.67	11817.83	9976.89	13304.69
DESeq		R. aegyptiacus	Transcriptome	4688.14	4484.99	3337.02	4272.59	4453.64	4511.38	5566.37	4121.3	3949.44
DESeq		R. aegyptiacus	Genome	8479.6	7663.82	5402.6	8025.28	8264.97	8344.18	10591.97	7682.85	7003.65

Human Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	14497.23	11756.88	11817.83	-0.3	-0.29	0.01
7h	11652.03	12739.94	9976.89	0.13	-0.22	-0.35
23h	12680.36	15998.67	13304.69	0.34	0.07	-0.27

Human Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	14497.23	11652.03	12680.36	-0.32	-0.19	0.12
Ebov	11756.88	12739.94	15998.67	0.12	0.44	0.33
Marv	11817.83	9976.89	13304.69	-0.24	0.17	0.42

Bat Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	4688.14	4272.59	5566.37	-0.13	0.25	0.38
7h	4484.99	4453.64	4121.3	-0.01	-0.12	-0.11
23h	3337.02	4511.38	3949.44	0.44	0.24	-0.19

Bat Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	4688.14	4484.99	3337.02	-0.06	-0.49	-0.43
Ebov	4272.59	4453.64	4511.38	0.06	0.08	0.02
Marv	5566.37	4121.3	3949.44	-0.43	-0.5	-0.06