Differential gene expression: Human MOCK samples compared to EBOV+MARV cells using replicates

Differential gene expression of HuH7 MOCK samples (3h, 7h and 23h as replicates) compared to EBOV+MARV samples (as replicates, called FILO) at 23h. For 3h and 7h no differential expressed genes were found with a padj < 0.05.

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gene baseMean_mock baseMean_filo log2(fc) padj read_max_mock read_max_ebov read_max_marv
SGK110 2.02 51.73 4.68 0.02 2 11 6
SULT1E1 25.56 1.09 -4.56 0.01 6 7 4
HPR 121.67 7.61 -4.0 0.0 77 79 116
PLAU 175.46 11.7 -3.91 0.0 33 29 23
LOC100505988 6.76 100.62 3.9 0.0 4 31 25
RBM24 51.4 749.06 3.87 0.0 10 114 55
C10orf55 178.82 12.79 -3.81 0.0 33 29 23
FMNL1 35.67 455.05 3.67 0.0 5 47 25
BHLHE41 11.16 132.04 3.56 0.0 4 19 12
LOC100507347 4.05 45.8 3.5 0.01 2 13 3
VCAM1 23.66 2.17 -3.44 0.04 5 4 8
GABRB1 159.58 15.39 -3.37 0.0 20 19 20
NRG1 42.15 384.27 3.19 0.0 20 47 33
HOGA1 43.52 4.89 -3.15 0.0 8 6 14
CYP7B1 24.53 2.83 -3.11 0.04 24 44 22
HMGCS2 108.75 13.51 -3.01 0.0 17 18 16
LZTS1 308.8 38.43 -3.01 0.0 24 20 19
SLC2A2 59.88 7.95 -2.91 0.02 15 21 22
RASSF6 6.75 48.87 2.86 0.0 4 6 6
ANXA3 226.65 1562.27 2.79 0.0 66 296 173
MYCNOS 296.44 44.27 -2.74 0.02 73 57 75
C2orf54 81.47 12.36 -2.72 0.0 10 8 8
ZG16 64.05 10.44 -2.62 0.0 12 14 14
LPPR5 107.21 17.91 -2.58 0.0 20 18 19
IRF8 88.23 14.96 -2.56 0.0 13 15 11
EMP3 12.77 75.3 2.56 0.0 7 23 24
KIF6 42.75 7.44 -2.52 0.01 38 29 28
HP 96.4 16.85 -2.52 0.0 97 128 181
SOCS1 49.47 9.07 -2.45 0.01 13 25 14
SPTLC3 3416.46 626.47 -2.45 0.0 204 299 240
MYCN 3825.08 702.93 -2.44 0.0 373 340 322
CYP1A1 2652.15 489.17 -2.44 0.02 236 395 562
LOC100653010 148.81 788.04 2.4 0.0 52 239 178
SPINT1 63.9 336.13 2.4 0.0 19 31 46
RASD1 39.77 207.74 2.38 0.01 8 37 22
ANGPT2 29.03 150.44 2.37 0.0 18 28 17
ASB4 127.67 24.84 -2.36 0.0 11 11 11
HIST1H2BO 55.74 10.9 -2.35 0.01 27 35 39
AIM1 673.7 133.24 -2.34 0.0 60 75 111
SMPD3 36.65 7.44 -2.3 0.04 6 8 7
TRPV2 46.64 228.72 2.29 0.0 7 26 18
F2RL1 68.16 329.69 2.27 0.0 15 28 29
GDF15 404.62 1915.81 2.24 0.0 84 431 332
MCOLN3 33.49 158.19 2.24 0.0 6 11 11
RGS13 59.86 12.88 -2.22 0.02 10 11 12
FAM5B 31.66 146.97 2.21 0.0 6 18 8
PVT1 92.38 419.88 2.18 0.0 5 21 9
ROR1 757.01 168.41 -2.17 0.0 38 55 51
NPTX2 1269.17 288.84 -2.14 0.0 106 94 134
LOC100506127 147.21 33.85 -2.12 0.0 12 10 18
RIBC2 54.98 12.65 -2.12 0.03 10 11 18
FAM134B 18.8 81.49 2.12 0.01 5 13 10
PEG10 148275.9 34921.14 -2.09 0.0 6192 7865 6568
LYPD6 78.64 18.63 -2.08 0.01 13 15 15
GATM 1453.33 348.93 -2.06 0.0 185 214 213
CDH9 231.44 55.82 -2.05 0.0 26 29 26
CXCL12 106.9 26.09 -2.03 0.01 16 7 6
CD55 36.11 146.86 2.02 0.0 8 37 26
PLCG2 61.18 247.99 2.02 0.0 6 18 15
KHK 163.18 40.32 -2.02 0.0 24 28 29
C14orf105 149.11 599.14 2.01 0.0 11 42 20
NCRNA00255 59.32 14.96 -1.99 0.03 201 211 197
HABP2 806.57 204.9 -1.98 0.03 81 83 102
TRIM15 60.04 233.89 1.96 0.0 14 36 19
LOC100506928 69.06 18.02 -1.94 0.02 32 38 50
SKP2 14370.05 3798.2 -1.92 0.0 1621 1233 1536
KRT23 130.06 489.23 1.91 0.0 23 67 65
LOC100506881 174.9 655.76 1.91 0.0 24 75 83
KYNU 93.41 350.2 1.91 0.0 35 41 37
MAP2K6 560.65 149.74 -1.9 0.0 71 70 64
DGKK 1818.8 488.29 -1.9 0.03 121 148 165
BDH1 141.07 38.28 -1.88 0.0 10 15 20
ITPKA 353.13 95.99 -1.88 0.0 34 49 43
CCR6 2544.13 698.51 -1.86 0.0 199 200 234
N4BP3 48.5 176.64 1.86 0.02 7 19 8
RAB3IL1 159.05 577.66 1.86 0.0 20 110 48
CAPN2 225.54 818.44 1.86 0.05 24 86 50
LOC100128130 35.31 126.66 1.84 0.01 10 24 11
F13B 221.86 62.32 -1.83 0.0 29 28 41
FAM40B 336.48 95.19 -1.82 0.0 19 21 23
ISG20 49.73 175.66 1.82 0.02 8 42 19
ENO2 30.57 107.32 1.81 0.02 9 18 8
DLGAP1 81.46 285.54 1.81 0.0 59 117 63
CASZ1 156.12 546.36 1.81 0.0 11 29 16
GRIN2D 24.14 83.54 1.79 0.04 4 10 7
SNAP25 208.55 60.28 -1.79 0.0 21 21 18
SLC13A5 1903.91 552.89 -1.78 0.0 139 140 174
LOC100652935 519.04 1786.65 1.78 0.0 133 413 447
OTX1 474.6 138.51 -1.78 0.0 40 40 61
LRMP 481.62 141.17 -1.77 0.0 55 50 56
E2F2 1131.88 332.94 -1.77 0.0 54 60 68
ABCA1 13991.79 4139.82 -1.76 0.0 381 397 367
TGFB2 148.8 498.74 1.74 0.0 14 28 29
FAM5C 784.33 234.68 -1.74 0.02 69 71 57
MICAL1 209.76 693.29 1.72 0.0 19 52 42
VIM 1335.98 4350.34 1.7 0.0 173 465 628
IL15 47.01 151.44 1.69 0.01 6 8 11
ENPP2 1060.49 329.64 -1.69 0.0 102 128 143
CROT 314.07 98.43 -1.67 0.0 30 33 33
ABLIM3 388.38 1231.04 1.66 0.0 32 73 65
CCDC40 124.74 39.4 -1.66 0.02 10 8 16
MOSC1 2961.84 937.71 -1.66 0.0 348 435 396
LOC100507098 196.77 62.6 -1.65 0.01 65 51 53
POU2AF1 158.84 50.73 -1.65 0.01 29 18 21
ZNF30 196.58 62.98 -1.64 0.01 21 17 23
ACSL5 89.61 279.69 1.64 0.0 9 26 18
SLCO1B3 1667.77 536.3 -1.64 0.02 194 159 108
RIT1 697.11 2165.72 1.64 0.0 90 193 138
CPM 1714.63 559.76 -1.62 0.0 124 162 169
TRIM45 147.88 48.84 -1.6 0.02 20 19 17
GNA13 3713.45 11225.27 1.6 0.0 268 814 433
HSD17B2 858.68 286.23 -1.58 0.0 87 116 97
MICALL2 939.22 313.32 -1.58 0.0 35 34 37
C1orf183 90.16 268.43 1.57 0.0 11 15 11
KANK4 935.96 314.72 -1.57 0.0 49 62 37
PIK3C2B 4220.1 1422.55 -1.57 0.0 161 142 180
SYT15 190.99 64.43 -1.57 0.01 21 16 14
LOC730101 1086.66 366.88 -1.57 0.0 80 97 116
ACADSB 10739.09 3647.91 -1.56 0.0 794 1121 1165
PGM2L1 273.89 793.87 1.54 0.0 21 42 31
PCDHB5 1558.16 537.9 -1.53 0.0 166 164 207
PTPRU 186.85 64.69 -1.53 0.02 16 13 20
UNG 5691.78 1998.32 -1.51 0.0 773 713 932
UHRF1 3148.58 1106.51 -1.51 0.0 309 318 342
EML6 427.5 150.89 -1.5 0.01 22 24 21
DKK1 669.82 237.87 -1.49 0.02 180 252 201
SMOX 401.32 1126.46 1.49 0.01 43 145 102
PITPNM2 297.7 822.63 1.47 0.0 17 42 27
SLC38A3 1919.91 699.51 -1.46 0.0 190 266 297
ACOT9 420.88 1149.75 1.45 0.01 59 187 113
KIAA0101 917.44 336.08 -1.45 0.01 211 306 289
IHH 320.2 117.5 -1.45 0.01 34 40 34
HS3ST3B1 4784.89 1757.02 -1.45 0.01 313 271 369
KNG1 2713.74 997.23 -1.44 0.0 431 701 568
MCM10 5366.53 1973.17 -1.44 0.0 360 343 399
HIST1H2AC 734.44 270.07 -1.44 0.01 246 252 271
PASK 539.9 198.69 -1.44 0.02 21 31 37
GPR37 642.87 1746.44 1.44 0.0 51 154 108
ENC1 3152.83 1169.28 -1.43 0.0 172 125 157
KIF5A 74.07 199.47 1.43 0.03 10 13 19
TTC30A 376.04 139.8 -1.43 0.02 41 34 42
GINS2 674.94 251.16 -1.43 0.01 134 205 182
ITGAL 495.46 184.4 -1.43 0.01 42 38 59
TRIB3 2254.99 6013.19 1.42 0.0 229 682 417
B3GNT1 3008.64 1131.54 -1.41 0.01 427 422 498
C19orf66 222.17 83.57 -1.41 0.03 32 35 33
MGC12916 1001.11 377.32 -1.41 0.02 115 118 155
PDLIM3 309.72 818.99 1.4 0.0 27 71 61
FADS3 253.05 669.05 1.4 0.01 75 83 63
PCNA 3607.57 1366.71 -1.4 0.01 724 686 860
AMPD3 54.91 143.57 1.39 0.05 6 11 16
TCF19 901.99 345.12 -1.39 0.01 64 88 86
CD38 283.01 108.3 -1.39 0.04 44 55 59
PXMP4 854.42 327.03 -1.39 0.01 63 66 83
GABARAPL1 616.01 1599.63 1.38 0.0 81 203 159
HEPACAM2 308.66 119.05 -1.37 0.03 40 37 47
PCNA-AS1 1060.96 409.3 -1.37 0.01 372 418 496
DYNLL1 1825.63 4730.77 1.37 0.0 666 1802 1385
GLUD2 7792.18 3008.9 -1.37 0.01 1633 1655 1633
PDGFRB 551.12 213.16 -1.37 0.04 33 32 47
DOCK11 330.45 850.79 1.36 0.0 21 42 42
MCM6 8872.43 3450.77 -1.36 0.01 849 1141 1141
C6orf145 117.27 300.61 1.36 0.02 17 37 22
LANCL1 2803.57 1096.19 -1.35 0.01 171 199 195
ZNF519 1003.07 392.31 -1.35 0.02 73 78 74
POLD3 1139.86 447.52 -1.35 0.01 90 109 117
STAT6 645.74 1637.66 1.34 0.03 43 97 60
FASTKD3 457.91 180.72 -1.34 0.03 46 46 50
SIVA1 403.22 1019.05 1.34 0.01 54 73 91
PROX1 6375.64 2526.82 -1.34 0.01 514 515 526
SLC16A10 607.74 242.17 -1.33 0.03 61 72 62
RRM2 7288.59 2915.93 -1.32 0.02 871 1033 982
C2orf72 3642.05 1457.51 -1.32 0.01 278 304 289
SGK1 1661.08 666.25 -1.32 0.04 235 220 301
DNAJB4 1491.34 3714.16 1.32 0.03 187 582 356
FAM125B 746.18 301.13 -1.31 0.02 46 62 60
ANPEP 3926.02 1588.66 -1.31 0.02 222 232 277
SERPIND1 3263.55 1324.6 -1.3 0.02 403 591 538
FAM111A 1403.76 572.04 -1.3 0.04 92 84 86
STBD1 1015.42 2481.45 1.29 0.01 115 301 166
EPPK1 278.65 679.75 1.29 0.01 22 83 52
ADAM22 938.16 384.92 -1.29 0.04 62 54 56
C22orf23 143.47 349.51 1.28 0.03 19 34 25
C15orf38 673.96 278.93 -1.27 0.03 95 98 94
TAT 517.83 214.88 -1.27 0.05 59 59 64
ZNF619 480.11 199.88 -1.26 0.04 56 41 66
SEMA3D 1194.28 497.52 -1.26 0.04 85 187 91
GPAM 7881.14 3285.66 -1.26 0.04 463 570 394
ANKS1B 567.68 1359.04 1.26 0.01 76 94 73
EXO1 2545.27 1063.52 -1.26 0.02 213 223 272
AGT 18019.11 7535.45 -1.26 0.03 2218 2025 2883
KPNA5 553.73 1320.15 1.25 0.01 53 135 92
VSNL1 1854.99 778.86 -1.25 0.02 300 383 324
MAL2 7676.92 3226.58 -1.25 0.03 1100 1006 1255
ONECUT1 1494.31 629.88 -1.25 0.03 149 178 161
MAF 647.14 273.5 -1.24 0.04 72 70 69
MCM4 10348.6 4378.2 -1.24 0.02 919 856 1102
FLNC 935.28 2206.88 1.24 0.03 36 52 66
SLC29A4 2286.89 973.78 -1.23 0.02 159 143 167
SLC35D1 9506.34 4052.13 -1.23 0.02 445 457 433
NFE2L3 780.59 1823.59 1.22 0.02 68 65 130
PNPO 1187.14 509.75 -1.22 0.04 80 116 117
FABP1 1764.02 758.83 -1.22 0.02 687 620 696
GLYCTK 1478.73 636.4 -1.22 0.03 143 149 190
CDR2L 365.25 848.2 1.22 0.02 42 89 79
AKAP12 555.08 1286.99 1.21 0.01 30 54 49
MICALL1 848.3 1963.36 1.21 0.02 48 143 73
PDDC1 1055.82 458.32 -1.2 0.04 77 65 76
CAT 1856.27 808.61 -1.2 0.04 194 190 235
GLUD1 8330.91 3640.3 -1.19 0.03 1299 1660 1340
ATP2B2 13149.65 5764.71 -1.19 0.04 376 438 422
DTL 3359.98 1473.05 -1.19 0.04 607 590 466
FMNL2 3679.15 8346.42 1.18 0.03 345 440 418
TACC2 651.92 1478.46 1.18 0.02 42 68 64
PVRL3 2741.2 1213.16 -1.18 0.04 299 367 296
APOB 402836.77 179114.67 -1.17 0.03 6508 7645 5227
KRT19 918.45 2059.35 1.16 0.02 282 398 330
CMTM3 478.0 1068.94 1.16 0.03 51 162 100
E2F8 1388.43 624.34 -1.15 0.04 110 118 160
ANK3 908.56 2008.18 1.14 0.02 40 70 79
TNIP1 970.88 2137.45 1.14 0.04 82 197 115
CPS1 4728.99 2149.78 -1.14 0.03 283 315 334
LOC100505577 855.1 1880.44 1.14 0.03 319 760 464
PAK1 755.08 1643.27 1.12 0.04 64 149 82
PALLD 2611.87 5632.48 1.11 0.02 164 320 299
ICAM1 1861.74 4006.91 1.11 0.03 215 364 291
FYCO1 1463.81 3138.58 1.1 0.04 53 109 66
RBMS1 1485.98 3159.62 1.09 0.05 151 291 189
CRABP2 0.0 12.9 0.0 0.02 0 8 5
ADH1B 16.87 0.0 0.0 0.01 9 5 8