LOC401317
| Name | Synonyms | Full Name | RefSeq ID | Description (.pdf) | IGV-img (humangenome) | Sashimi-img (humangenome) | UCSC-img (humangenome) | IGV-img (batgenome) |
|---|---|---|---|---|---|---|---|---|
| LOC401317 | A4D193, BC087859, uc003szp.3 |  |
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NONE |
Download all snapshots for IGV, UCSC and Sashimi (zip archive)
Description
This gene annotation is based on a cDNA clone from Homo sapiens. The gene is uncharacterized and according to UCSC situated between the first and second exon of CREB5 which both code for the UTR of only one isoforms.
The gene expression is upregulated in human cells 23 h after infection with Ebola, while the gene is only slightly expressed in all other human cells samples and no homolog could be found in the bat cells transcriptome.
Maximum read counts and DESeq normalized read counts for human and bat cell lines
| Source | Species | Mapping on | Mock3h | Mock7h | Mock23h | EBOV3h | EBOV7h | EBOV23h | MARV3h | MARV7h | MARV23h | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Read_Max |  | H. sapiens | Genome | 3 | 3 | 2 | 2 | 1 | 41 | 2 | 4 | 6 |
Read_Max |  | R. aegyptiacus | Transcriptome | NA | NA | NA | NA | NA | NA | NA | NA | NA |
Read_Max |  | R. aegyptiacus | Genome | NA | NA | NA | NA | NA | NA | NA | NA | NA |
DESeq | | H. sapiens | Genome | 6.07 | 9.16 | 4.97 | 5.56 | 2.63 | 158.91 | 8.89 | 8.19 | 20.57 |
DESeq | | R. aegyptiacus | Transcriptome | NA | NA | NA | NA | NA | NA | NA | NA | NA |
DESeq | | R. aegyptiacus | Genome | NA | NA | NA | NA | NA | NA | NA | NA | NA |