LOC401317

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
LOC401317 A4D193, BC087859, uc003szp.3 pdf NONE

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

This gene annotation is based on a cDNA clone from Homo sapiens. The gene is uncharacterized and according to UCSC situated between the first and second exon of CREB5 which both code for the UTR of only one isoforms.

The gene expression is upregulated in human cells 23 h after infection with Ebola, while the gene is only slightly expressed in all other human cells samples and no homolog could be found in the bat cells transcriptome.

Show legend

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome3 3 2 2 1 41 2 4 6
Read_Max
batR. aegyptiacusTranscriptome NA NA NA NA NA NA NA NA NA
Read_Max
bat_genomeR. aegyptiacusGenome NA NA NA NA NA NA NA NA NA
DESeq
humanH. sapiensGenome 6.07 9.16 4.97 5.56 2.63 158.91 8.89 8.19 20.57
DESeq
batR. aegyptiacusTranscriptome NA NA NA NA NA NA NA NA NA
DESeq
bat_genomeR. aegyptiacusGenome NA NA NA NA NA NA NA NA NA

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 6.07 5.56 8.89 -0.13 0.55 0.68
7h 9.16 2.63 8.19 -1.8 -0.16 1.64
23h 4.97 158.91 20.57 5.0 2.05 -2.95

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 6.07 9.16 4.97 0.59 -0.29 -0.88
Ebov 5.56 2.63 158.91 -1.08 4.84 5.92
Marv 8.89 8.19 20.57 -0.12 1.21 1.33

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h NA NA NA NA NA NA
7h NA NA NA NA NA NA
23h NA NA NA NA NA NA

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock NA NA NA NA NA NA
Ebov NA NA NA NA NA NA
Marv NA NA NA NA NA NA