SPP1

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
SPP1 OPN, BNSP,BSPI, ETA-1 secreted phosphoprotein 1 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Homo sapiens secreted phosphoprotein 1 (SPP1). The protein encoded by this gene is involved in the attachment of osteoclasts to the mineralized bone matrix and also in regulation of IFN-gamma and IL-12.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome62 64 19 58 70 11 110 174 399
Read_Max
batR. aegyptiacusTranscriptome 1274 1347 850 1016 819 579 931 1149 1151
Read_Max
bat_genomeR. aegyptiacusGenome 1425 1064 715 1298 696 345 788 1377 1284
DESeq
humanH. sapiensGenome 266.87 276.37 97.3 281.61 242.45 33.9 360.65 585.33 2283.34
DESeq
batR. aegyptiacusTranscriptome 6140.75 6923.95 6200.3 6135.06 5996.62 3652.94 6698.8 6180.21 6667.16
DESeq
bat_genomeR. aegyptiacusGenome 6589.8 6481.89 5992.84 7703.36 6507.06 3939.73 7345.44 6349.91 6909.47

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 266.87 281.61 360.65 0.08 0.43 0.36
7h 276.37 242.45 585.33 -0.19 1.08 1.27
23h 97.3 33.9 2283.34 -1.52 4.55 6.07

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 266.87 276.37 97.3 0.05 -1.46 -1.51
Ebov 281.61 242.45 33.9 -0.22 -3.05 -2.84
Marv 360.65 585.33 2283.34 0.7 2.66 1.96

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 6140.75 6135.06 6698.8 -0.0 0.13 0.13
7h 6923.95 5996.62 6180.21 -0.21 -0.16 0.04
23h 6200.3 3652.94 6667.16 -0.76 0.1 0.87

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 6140.75 6923.95 6200.3 0.17 0.01 -0.16
Ebov 6135.06 5996.62 3652.94 -0.03 -0.75 -0.72
Marv 6698.8 6180.21 6667.16 -0.12 -0.01 0.11