TFCP2L1

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
TFCP2L1 LBP-9, CRTR1 transcription factor CP2-like 1 NM_014553 pdf NONE

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

The transcription factor CP2-like 1 (TFCP2L1) gene is not expressed. Only in the probe of 23 h Marburg infected cells in human cells, a few reads mapped to the 5' part of the gene.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome6 2 4 4 4 5 6 3 8
Read_Max
batR. aegyptiacusTranscriptome 5 2 2 3 1 2 4 4 5
Read_Max
bat_genomeR. aegyptiacusGenome 8 3 4 5 3 4 4 5 8
DESeq
humanH. sapiensGenome 5.06 7.12 2.99 2.14 4.25 6.26 4.51 2.6 104.3
DESeq
batR. aegyptiacusTranscriptome 10.24 3.72 5.89 5.58 2.1 6.13 13.24 6.78 16.74
DESeq
bat_genomeR. aegyptiacusGenome 33.52 11.86 24.55 21.72 26.79 37.86 25.86 17.44 56.51

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 5.06 2.14 4.51 -1.24 -0.17 1.08
7h 7.12 4.25 2.6 -0.74 -1.45 -0.71
23h 2.99 6.26 104.3 1.07 5.12 4.06

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 5.06 7.12 2.99 0.49 -0.76 -1.25
Ebov 2.14 4.25 6.26 0.99 1.55 0.56
Marv 4.51 2.6 104.3 -0.79 4.53 5.33

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 10.24 5.58 13.24 -0.88 0.37 1.25
7h 3.72 2.1 6.78 -0.82 0.87 1.69
23h 5.89 6.13 16.74 0.06 1.51 1.45

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 10.24 3.72 5.89 -1.46 -0.8 0.66
Ebov 5.58 2.1 6.13 -1.41 0.14 1.55
Marv 13.24 6.78 16.74 -0.97 0.34 1.3