SCN7A

Name	Synonyms	Full Name	RefSeq ID	Description (.pdf)	IGV-img (human_genome)	Sashimi-img (human_genome)	UCSC-img (human_genome)	IGV-img (bat_genome)
SCN7A	Nav2.1, Nav2.2, NaG	sodium channel, voltage gated, type VII alpha subunit		pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Mediates the voltage-dependent sodium ion permeability of excitable membranes. Very low to none expression. Only one exon present.

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source		Species	Mapping on	Mock_3h	Mock_7h	Mock_23h	EBOV_3h	EBOV_7h	EBOV_23h	MARV_3h	MARV_7h	MARV_23h
Read_Max		H. sapiens	Genome	23	34	22	21	52	58	26	42	39
Read_Max		R. aegyptiacus	Transcriptome	NA	NA	2	NA	NA	NA	3	NA	NA
Read_Max		R. aegyptiacus	Genome	5	2	2	5	2	2	3	4	2
DESeq		H. sapiens	Genome	43.62	38.74	15.89	40.92	41.65	3.63	52.76	29.78	84.73
DESeq		R. aegyptiacus	Transcriptome	1.0	1.0	3.44	1.0	1.0	1.0	5.45	1.0	1.0
DESeq		R. aegyptiacus	Genome	17.19	3.65	3.35	12.84	5.58	9.14	12.37	7.14	2.57

Human Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	43.62	40.92	52.76	-0.09	0.27	0.37
7h	38.74	41.65	29.78	0.1	-0.38	-0.48
23h	15.89	3.63	84.73	-2.13	2.41	4.54

Human Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	43.62	38.74	15.89	-0.17	-1.46	-1.29
Ebov	40.92	41.65	3.63	0.03	-3.49	-3.52
Marv	52.76	29.78	84.73	-0.83	0.68	1.51

Bat Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	1.0	1.0	5.45	0.0	2.45	2.45
7h	1.0	1.0	1.0	0.0	0.0	0.0
23h	3.44	1.0	1.0	-1.78	-1.78	0.0

Bat Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	1.0	1.0	3.44	0.0	1.78	1.78
Ebov	1.0	1.0	1.0	0.0	0.0	0.0
Marv	5.45	1.0	1.0	-2.45	-2.45	0.0