ALPK3

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
ALPK3 MAK, MIDORI, KIAA1330, Midori alpha-kinase 3 NM_020778 pdf NONE

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Kinase that recognizes phosphorylation sites in which the surrounding peptides have an alpha-helical conformation. Plays a role in cardiomyocyte differentiation.

This gene is highly expressed in both infected human cells samples after 23 h. %%%%%%%%%%%%%%%%%%%%%

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome9 9 12 10 14 177 18 27 58
Read_Max
batR. aegyptiacusTranscriptome 3 3 8 8 4 11 3 4 5
Read_Max
bat_genomeR. aegyptiacusGenome 6 8 7 4 4 7 3 6 13
DESeq
humanH. sapiensGenome 189.75 237.61 196.59 233.7 212.37 5788.43 292.23 412.67 2532.34
DESeq
batR. aegyptiacusTranscriptome 11.92 10.08 35.2 31.22 22.9 62.59 13.24 16.7 18.49
DESeq
bat_genomeR. aegyptiacusGenome 58.44 108.61 141.7 40.49 93.76 237.58 52.85 75.33 97.61

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 189.75 233.7 292.23 0.3 0.62 0.32
7h 237.61 212.37 412.67 -0.16 0.8 0.96
23h 196.59 5788.43 2532.34 4.88 3.69 -1.19

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 189.75 237.61 196.59 0.32 0.05 -0.27
Ebov 233.7 212.37 5788.43 -0.14 4.63 4.77
Marv 292.23 412.67 2532.34 0.5 3.12 2.62

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 11.92 31.22 13.24 1.39 0.15 -1.24
7h 10.08 22.9 16.7 1.18 0.73 -0.46
23h 35.2 62.59 18.49 0.83 -0.93 -1.76

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 11.92 10.08 35.2 -0.24 1.56 1.8
Ebov 31.22 22.9 62.59 -0.45 1.0 1.45
Marv 13.24 16.7 18.49 0.33 0.48 0.15