PSAPL1

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
PSAPL1 prosaposin-like 1 (gene/pseudogene) pdf NONE

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

The prosaposin-like 1 (gene/pseudogene) (PSAPL1) is located in an intron of the sortilin-related VPS10 domain containing receptor 2 (SORCS2) gene.

The PSAPL1 is not expressed in the investigated cell lines.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome4 4 6 8 6 3 5 6 7
Read_Max
batR. aegyptiacusTranscriptome NA 0 0 2 0 NA NA 1 2
Read_Max
bat_genomeR. aegyptiacusGenome 150 115 84 130 67 52 70 134 145
DESeq
humanH. sapiensGenome 36.52 22.42 35.75 29.52 33.52 3.63 41.35 26.58 78.2
DESeq
batR. aegyptiacusTranscriptome 1.0 1.0 1.0 2.83 1.0 1.0 1.0 1.83 3.62
DESeq
bat_genomeR. aegyptiacusGenome 4.3 8.21 22.32 8.89 8.93 1.31 4.5 5.55 5.14

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 36.52 29.52 41.35 -0.31 0.18 0.49
7h 22.42 33.52 26.58 0.58 0.25 -0.33
23h 35.75 3.63 78.2 -3.3 1.13 4.43

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 36.52 22.42 35.75 -0.7 -0.03 0.67
Ebov 29.52 33.52 3.63 0.18 -3.02 -3.21
Marv 41.35 26.58 78.2 -0.64 0.92 1.56

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1.0 2.83 1.0 1.5 0.0 -1.5
7h 1.0 1.0 1.83 0.0 0.87 0.87
23h 1.0 1.0 3.62 0.0 1.86 1.86

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1.0 1.0 1.0 0.0 0.0 0.0
Ebov 2.83 1.0 1.0 -1.5 -1.5 0.0
Marv 1.0 1.83 3.62 0.87 1.86 0.98