CSRNP1

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
CSRNP1 FAM130B, TAIP-3, URAX1,URAX1, DKFZp566F164, FAM130B cysteine-serine-rich nuclear protein 1 NM_033027 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

This gene encodes a protein that localizes to the nucleus and expression of this gene is induced in response to elevated levels of axin. The Wnt signalling pathway, which is negatively regulated by axin, is important in axis formation in early development and impaired regulation of this signalling pathway is often involved in tumors.

This gene is found to be up-regulated in human cells by Ebola (23 h) but not in bat cells.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome62 53 48 39 74 437 58 73 59
Read_Max
batR. aegyptiacusTranscriptome 52 34 53 57 70 68 47 89 103
Read_Max
bat_genomeR. aegyptiacusGenome 58 56 48 31 56 37 42 107 116
DESeq
humanH. sapiensGenome 1022.89 942.34 875.68 788.07 837.53 6542.45 864.17 924.25 1000.27
DESeq
batR. aegyptiacusTranscriptome 227.0 220.66 261.19 301.34 342.67 321.8 222.37 288.52 383.25
DESeq
bat_genomeR. aegyptiacusGenome 556.88 590.51 608.1 549.04 763.44 742.78 531.9 681.14 867.32

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1022.89 788.07 864.17 -0.38 -0.24 0.13
7h 942.34 837.53 924.25 -0.17 -0.03 0.14
23h 875.68 6542.45 1000.27 2.9 0.19 -2.71

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1022.89 942.34 875.68 -0.12 -0.22 -0.11
Ebov 788.07 837.53 6542.45 0.09 3.05 2.97
Marv 864.17 924.25 1000.27 0.1 0.21 0.11

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 227.0 301.34 222.37 0.41 -0.03 -0.44
7h 220.66 342.67 288.52 0.63 0.39 -0.25
23h 261.19 321.8 383.25 0.3 0.55 0.25

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 227.0 220.66 261.19 -0.04 0.2 0.24
Ebov 301.34 342.67 321.8 0.19 0.09 -0.09
Marv 222.37 288.52 383.25 0.38 0.79 0.41