CDH1

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
CDH1 Cadherin 1, E-Cadherin, UVO,uvomorulin, CD324 cadherin 1, type 1, E-cadherin (epithelial) NM_004360 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Homo sapiens cadherin 1, type 1, E-cadherin (epithelial) (CDH1)

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome181 166 148 146 244 67 217 224 331
Read_Max
batR. aegyptiacusTranscriptome 32 23 9 18 23 14 20 15 29
Read_Max
bat_genomeR. aegyptiacusGenome 33 14 9 23 14 11 19 21 32
DESeq
humanH. sapiensGenome 3634.95 3271.73 2623.05 3833.7 3191.02 872.14 3676.49 3198.4 7151.39
DESeq
batR. aegyptiacusTranscriptome 337.06 275.12 110.94 116.37 136.79 183.21 249.07 152.2 201.31
DESeq
bat_genomeR. aegyptiacusGenome 412.51 174.32 203.07 364.38 196.44 265.0 342.98 218.85 293.67

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 3634.95 3833.7 3676.49 0.08 0.02 -0.06
7h 3271.73 3191.02 3198.4 -0.04 -0.03 0.0
23h 2623.05 872.14 7151.39 -1.59 1.45 3.04

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 3634.95 3271.73 2623.05 -0.15 -0.47 -0.32
Ebov 3833.7 3191.02 872.14 -0.26 -2.14 -1.87
Marv 3676.49 3198.4 7151.39 -0.2 0.96 1.16

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 337.06 116.37 249.07 -1.53 -0.44 1.1
7h 275.12 136.79 152.2 -1.01 -0.85 0.15
23h 110.94 183.21 201.31 0.72 0.86 0.14

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 337.06 275.12 110.94 -0.29 -1.6 -1.31
Ebov 116.37 136.79 183.21 0.23 0.65 0.42
Marv 249.07 152.2 201.31 -0.71 -0.31 0.4