RHOB

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
RHOB RhoB, RHOH6, MST081 ras homolog family member B NM_004040 pdf NONE

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Homo sapiens ras homolog family member B (RHOB), mRNA. The gene is highly expressed in bat and human.

It is upregulated upon infection of Marburg in bat cells, but slighlty downregulated in Ebola infected bat cells. In human cells it is stably expressed, with the exception of a three times increase expression due to Ebola infection.

Show legend

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome376 196 171 228 388 1560 375 333 388
Read_Max
batR. aegyptiacusTranscriptome 198 277 398 323 306 305 255 371 528
Read_Max
bat_genomeR. aegyptiacusGenome 215 305 294 254 251 163 217 417 530
DESeq
humanH. sapiensGenome 3824.72 2428.3 1762.27 3231.41 2755.28 13466.83 3514.21 3134.45 3368.51
DESeq
batR. aegyptiacusTranscriptome 922.63 1194.61 2009.21 1334.21 1577.93 1311.13 1384.83 1517.92 2177.28
DESeq
bat_genomeR. aegyptiacusGenome 1158.46 1620.93 2358.75 1653.05 2062.62 1732.28 1748.65 1787.3 2643.06

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 3824.72 3231.41 3514.21 -0.24 -0.12 0.12
7h 2428.3 2755.28 3134.45 0.18 0.37 0.19
23h 1762.27 13466.83 3368.51 2.93 0.93 -2.0

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 3824.72 2428.3 1762.27 -0.66 -1.12 -0.46
Ebov 3231.41 2755.28 13466.83 -0.23 2.06 2.29
Marv 3514.21 3134.45 3368.51 -0.16 -0.06 0.1

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 922.63 1334.21 1384.83 0.53 0.59 0.05
7h 1194.61 1577.93 1517.92 0.4 0.35 -0.06
23h 2009.21 1311.13 2177.28 -0.62 0.12 0.73

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 922.63 1194.61 2009.21 0.37 1.12 0.75
Ebov 1334.21 1577.93 1311.13 0.24 -0.03 -0.27
Marv 1384.83 1517.92 2177.28 0.13 0.65 0.52