TRIM47

Name	Synonyms	Full Name	RefSeq ID	Description (.pdf)	IGV-img (human_genome)	Sashimi-img (human_genome)	UCSC-img (human_genome)	IGV-img (bat_genome)
TRIM47	GOA, NM_033452, NP_258411, Q96GU5, Q96LD4, Q9BRN7, RNF100, TRI47_HUMAN	tripartite motif containing 47		pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

The gene of the tripartite motif containing 47 (TRIM47) shows very low expression.

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source		Species	Mapping on	Mock_3h	Mock_7h	Mock_23h	EBOV_3h	EBOV_7h	EBOV_23h	MARV_3h	MARV_7h	MARV_23h
Read_Max		H. sapiens	Genome	7	15	24	12	18	6	11	22	18
Read_Max		R. aegyptiacus	Transcriptome	29	27	21	23	23	21	22	25	25
Read_Max		R. aegyptiacus	Genome	23	32	22	24	20	15	16	30	42
DESeq		H. sapiens	Genome	38.55	120.33	121.13	117.35	85.55	35.21	65.91	103.32	211.95
DESeq		R. aegyptiacus	Transcriptome	142.14	158.03	220.88	179.56	151.03	208.88	140.05	162.94	197.81
DESeq		R. aegyptiacus	Genome	161.57	225.43	224.27	172.81	187.51	257.17	152.94	177.62	241.45

Human Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	38.55	117.35	65.91	1.61	0.77	-0.83
7h	120.33	85.55	103.32	-0.49	-0.22	0.27
23h	121.13	35.21	211.95	-1.78	0.81	2.59

Human Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	38.55	120.33	121.13	1.64	1.65	0.01
Ebov	117.35	85.55	35.21	-0.46	-1.74	-1.28
Marv	65.91	103.32	211.95	0.65	1.69	1.04

Bat Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	142.14	179.56	140.05	0.34	-0.02	-0.36
7h	158.03	151.03	162.94	-0.07	0.04	0.11
23h	220.88	208.88	197.81	-0.08	-0.16	-0.08

Bat Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	142.14	158.03	220.88	0.15	0.64	0.48
Ebov	179.56	151.03	208.88	-0.25	0.22	0.47
Marv	140.05	162.94	197.81	0.22	0.5	0.28